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Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy
Journal of Cellular and Molecular Medicine ( IF 4.3 ) Pub Date : 2021-01-22 , DOI: 10.1111/jcmm.16251
Zhenhao Lin 1, 2 , Yongchao Zhao 1, 2 , Fangjie Dai 1, 2 , Enyong Su 1, 2 , Fuhai Li 1, 2 , Yan Yan 1, 2
Affiliation  

Dilated cardiomyopathy (DCM) is a severe life‐threatening disease worldwide, and the underlying mechanisms remain unclear. Circular RNAs (circRNAs) have been reported to play important roles in various cardiovascular diseases and can function as competitive endogenous RNAs (ceRNAs). However, their role in human DCM has not been fully elucidated. In the present study, heart samples from DCM patients and healthy controls were used to identify circRNAs by RNA sequencing. Real‐time quantitative reverse transcription‐polymerase chain reaction (qRT‐PCR) was conducted to validate differentially expressed circRNAs and mRNAs. A total of 9585 circRNAs and 22050 mRNAs were detected in the two groups. Overall, 213 circRNAs and 617 mRNAs were significantly up‐regulated in the DCM group compared with the control group. Similarly, 85 circRNAs and 1125 mRNAs were significantly down‐regulated. According to the ceRNA theory, circRNAs can indirectly interact with mRNAs by directly binding to microRNAs (miRNAs), and circRNAs and mRNAs should be concurrently either up‐regulated or down‐regulated. Based on this theory, we constructed two circRNA‐miRNA‐mRNA networks by using the RNA sequencing data and prediction by proprietary software. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were performed to probe the potential functions of differentially expressed circRNAs. In conclusion, this study revealed that the expression of cardiac circRNAs was altered in human DCM and explored the potential functions of circRNAs by constructing ceRNA networks. These findings provide a foundation for future studies of circRNAs in DCM.

中文翻译:


人扩张型心肌病环状RNA表达变化分析及ceRNA网络构建



扩张型心肌病(DCM)是世界范围内一种严重危及生命的疾病,其潜在机制尚不清楚。据报道,环状RNA(circRNA)在各种心血管疾病中发挥重要作用,并且可以作为竞争性内源RNA(ceRNA)发挥作用。然而,它们在人类 DCM 中的作用尚未完全阐明。在本研究中,使用 DCM 患者和健康对照者的心脏样本通过 RNA 测序来鉴定 circRNA。进行实时定量逆转录聚合酶链反应(qRT-PCR)来验证差异表达的 circRNA 和 mRNA。两组共检测到 9585 个 circRNA 和 22050 个 mRNA。总体而言,与对照组相比,DCM 组中有 213 个 circRNA 和 617 个 mRNA 显着上调。同样,85 个 circRNA 和 1125 个 mRNA 显着下调。根据ceRNA理论,circRNA可以通过直接与microRNA(miRNA)结合来间接与mRNA相互作用,并且circRNA和mRNA应该同时上调或下调。基于这一理论,我们利用 RNA 测序数据和专有软件预测构建了两个 circRNA-miRNA-mRNA 网络。进行基因本体论(GO)和京都基因和基因组百科全书(KEGG)通路分析来探讨差异表达的circRNA的潜在功能。总之,本研究揭示了心脏 circRNA 的表达在人类 DCM 中发生了改变,并通过构建 ceRNA 网络探索了 circRNA 的潜在功能。这些发现为未来 DCM 中 circRNA 的研究奠定了基础。
更新日期:2021-03-07
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