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Identification of Na+/K+-ATPase α/β isoforms in Rhinella marina tissues by RNAseq and a molecular docking approach at the protein level to evaluate α isoform affinities for bufadienolides
Comparative Biochemistry and Physiology A: Molecular & Integrative Physiology ( IF 2.3 ) Pub Date : 2021-01-18 , DOI: 10.1016/j.cbpa.2021.110906
Katherine Medina-Ortiz 1 , Diana López-Alvarez 1 , Felipe Navia 1 , Thomas Hansen 1 , Leonardo Fierro 1 , Santiago Castaño 1
Affiliation  

Na+/K+-ATPase (NKA) function is inhibited by Bufadienolides (BD), a group of cardiotonic steroids (CTS) primarily produced by anurans of the Bufonidae family, such as Rhinella marina. This study characterized the presence of α and β NKA subunit isoforms in R. marina via RNAseq in four tissues: oocytes, skin, heart, and skeletal muscle. Transcripts encoding three α-like isoforms (α1, α2, α3) and three β-like isoforms (β1, β2, β4) were identified. The amino acid sequence of α1-like isoform shared 99.4% identity with the α1 isoform previously published for R. marina. Sequences for α2, α3, and β4 from R. marina were previously unavailable. The first extracellular loop in the α2-like isoform in R. marina showed similar substitutions to those found in their susceptible homologues in other taxa (L/Q111T and S119T); in contrast, this same loop in α3-like isoform showed similar substitutions (Q111L and G120R) to those reported for toad-eating animals such as snakes, which suggests relatively lower affinity for CTS. Docking results showed that all three α-like isoforms identified in R. marina transcriptomes have low affinity to CTS compared to the susceptible α1 isoform of Sus scrofa (pig), with α1-like isoform being the most resistant. The tissue-specific RNAseq results showed the following expression of NKA α-like and β-like subunit isoforms: Oocytes expressed α1 and β1; skin α1, β1, and low levels of β2; heart α1, α3, and β1; skeletal muscle α1, β4, with low levels of α2, α3, and β1. R. marina could be used as an important model for future structural, functional and pharmacological studies of NKA and its isoforms.



中文翻译:

通过 RNAseq 和蛋白质水平的分子对接方法鉴定 Rhinella marina 组织中的 Na+/K+-ATPase α/β 同种型,以评估 α 同种型对蟾蜍二烯内酯的亲和力

的Na + / K + -ATP酶(NKA)功能由Bufadienolides(BD),一组强心类固醇(CTS)主要由蟾蜍家庭的无尾两栖类,如产生的抑制Rhinella码头。本研究通过 RNAseq 在卵母细胞、皮肤、心脏和骨骼肌这四种组织中表征了R. marina中 α 和 β NKA亚基亚型的存在。鉴定了编码三种 α 样同种型(α 1、α 2、α 3)和三种 β 样同种型(β 1、β 2、β 4)的转录本。的α的氨基酸序列1样同种型共享99.4%的同一性与α 1先前为R. marina发表的同种型。以前无法获得来自R. marina 的α 2、α 3和 β 4序列。R. marina 中α 2样亚型中的第一个细胞外环显示出与其他类群(L/Q111T 和 S119T)中易感同源物相似的替换;相比之下,α 3样亚型中的相同环显示出与蛇等食蟾蜍动物报道的相似替代(Q111L 和 G120R),这表明对 CTS 的亲和力相对较低。对接结果表明,在R. marina 中鉴定出的所有三种 α 样亚型Sus scrofa(猪)的易感 α 1同种型相比,转录组对 CTS 的亲和力较低,其中 α 1样同种型最具抗性。组织特异性 RNAseq 结果显示 NKA α-like 和 β-like 亚基亚型的表达如下: 卵母细胞表达 α 1和 β 1;皮肤α 1、β 1和低水平的β 2;心脏α 1、α 3和β 1;骨骼肌α 1、β 4,α 2、α 3和β 1水平较低。玛丽娜河 可用作未来 NKA 及其同种型的结构、功能和药理学研究的重要模型。

更新日期:2021-01-25
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