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Improvement in the catalytic performance of a phenylpyruvate reductase from Lactobacillus plantarum by site-directed and saturation mutagenesis based on the computer-aided design
3 Biotech ( IF 2.6 ) Pub Date : 2021-01-13 , DOI: 10.1007/s13205-020-02633-3
Dong Zhang 1 , Xiuxiu Zhu 2 , Die Hu 3 , Zheng Wen 1 , Chen Zhang 2 , Minchen Wu 3
Affiliation  

To enhance the specific activity and catalytic efficiency (kcat/Km) of an NADH-dependent LpPPR, its directed modification was performed based on the computer-aided design using molecular docking simulation and multiple sequence alignment. Firstly, five single-site variants of an LpPPR-encoding gene (lpppr) were amplified and expressed in E. coli BL21 (DE3). The asymmetric reduction of 20 mM phenylpyruvic acid (PPA) was carried out using 50 mg/mL E. coli/lppprR53Q or /lppprA79V whole wet cells at 37 °C for 20 min, giving d-phenyllactic acid (PLA) with 41.1 or 44.3% yield, being 1.17- or 1.26-fold that by E. coli/lpppr. Secondly, double-site variants were obtained by saturation mutagenesis of Ala79 in LpPPRR53Q. Among all tested E. coli transformants, E. coli/lppprR53Q/A79V exhibited the highest d-PLA yield of 85.3%. The specific activity and kcat/Km of the purified LpPPRR53Q/A79V increased to 67.5 U/mg and 169.8 mM−1 s−1, which were 3.0- and 13.2-fold those of LpPPR, respectively. Finally, the catalytic mechanism analysis of LpPPRR53Q/A79V by molecular docking simulation indicated that the replacement of Arg53 in LpPPR with Gln expanded its substrate-binding pocket, while that Ala79 with Val formed an additional π-sigma interaction with phenyl group of PPA.



中文翻译:

基于计算机辅助设计的定点和饱和诱变提高植物乳杆菌苯丙酮酸还原酶的催化性能

为了提高NADH依赖性Lp PPR的比活性和催化效率(k cat / K m ),基于计算机辅助设计,使用分子对接模拟和多序列比对进行定向修饰。首先,在大肠杆菌BL21 (DE3)中扩增并表达了Lp PPR 编码基因 ( lpppr )的五个单位点变体。使用 50 mg/mL大肠杆菌/ lpppr R53Q或/ lpppr A79V全湿细胞在 37 °C 下对20 mM 苯基丙酮酸 (PPA) 进行不对称还原20 分钟,得到d-苯乳酸 (PLA) 的收率为 41.1 或 44.3%,是大肠杆菌/ lpppr的 1.17 或 1.26 倍。其次,通过对Lp PPR R53Q中的Ala79进行饱和诱变获得双位点变体。在所有测试的大肠杆菌转化体中,大肠杆菌/ lpppr R53Q/A79V的d -PLA 产率最高,为 85.3%。纯化的Lp PPR R53Q/A79V的比活性和k cat / K m增加到 67.5 U/mg 和 169.8 mM -1  s -1,分别是Lp PPR的 3.0 倍和 13.2 倍。最后,通过分子对接模拟对Lp PPR R53Q/A79V的催化机理分析表明,Lp PPR 中的 Arg53 被Gln 取代扩大了其底物结合口袋,而 Ala79 与 Val 形成了额外的 π-sigma 相互作用与苯基购电协议。

更新日期:2021-01-13
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