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A reliable, quick and universally applicable method for monitoring aptamer SELEX progress
Gene ( IF 2.6 ) Pub Date : 2021-01-11 , DOI: 10.1016/j.gene.2021.145416
Shahnawaz A. Baba , Shubham Jain , Naveen K. Navani

Nucleic acid aptamers for biosensing are developed from a complex ssDNA library through Systematic Evolution of Ligands by Exponential Enrichment (SELEX) process. Monitoring of SELEX process is crucial for generating high-affinity aptamers. Extant methods for monitoring aptamer selection are either arduous or give false-positive signals, which adversely impact the outcome of selection. We describe a colorimetric, simple and cost-effective, novel method to monitor the progress of in vitro selections. The power of rolling circle amplification (RCA) and inherent Horse Radish Peroxidase (HRP)-mimicking activity of G-quadruplex/hemin DNAzyme were employed to produce a colorimetric signal. A unique extension of DNA population at 3ʹ-OH end by PCR generated concatenated repeats by rolling circle amplification (RCA) reaction. Oxidation of substrate ABTS (2, 2’-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid)) in presence of H2O2 and hemin cofactor produced colorimetric signal. Analysis of the signal generated by the DNA pool bound to their target provided a quantitative measurement of SELEX. We demonstrate the reproducibility and accuracy of the method by evaluating the progress of two discrete selections.



中文翻译:

一种可靠,快速且普遍适用的监测适体SELEX进度的方法

用于生物传感的核酸适体是从复杂的ssDNA文库通过配体通过指数富集(SELEX)进行系统进化而开发的。监测SELEX过程对于产生高亲和力适体至关重要。现有的监测适体选择的方法要么费力,要么给出假阳性信号,这对选择的结果产生不利影响。我们描述了一种比色法,简单且经济高效的新颖方法来监测体外进展选择。G-四链体/ hemin DNAzyme的滚环扩增(RCA)和内在的辣根过氧化物酶(HRP)模拟活性被用来产生比色信号。通过PCR在3′-OH末端的DNA群体的独特延伸通过滚环扩增(RCA)反应产生串联的重复。在H 2 O 2和血红素辅助因子存在下,底物ABTS(2,2'-叠氮基双(3-乙基苯并噻唑啉-6-磺酸))的氧化产生比色信号。对结合至其靶标的DNA池产生的信号的分析提供了SELEX的定量测量。通过评估两个离散选择的进度,我们证明了该方法的可重复性和准确性。

更新日期:2021-01-18
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