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Rapid detection of Clostridium perfringens in food by loop-mediated isothermal amplification combined with a lateral flow biosensor
PLOS ONE ( IF 3.7 ) Pub Date : 2021-01-07 , DOI: 10.1371/journal.pone.0245144
Thanawat Sridapan , Wanida Tangkawsakul , Tavan Janvilisri , Wansika Kiatpathomchai , Sirintip Dangtip , Natharin Ngamwongsatit , Duangjai Nacapricha , Puey Ounjai , Surang Chankhamhaengdecha

Clostridium perfringens is a key anaerobic pathogen causing food poisoning. Definitive detection by standard culture method is time-consuming and labor intensive. Current rapid commercial test kits are prohibitively expensive. It is thus necessary to develop rapid and cost-effective detection tool. Here, loop-mediated isothermal amplification (LAMP) in combination with a lateral-flow biosensor (LFB) was developed for visual inspection of C. perfringens-specific cpa gene. The specificity of the developed test was evaluated against 40 C. perfringens and 35 other bacterial strains, which showed no cross-reactivity, indicating 100% inclusivity and exclusivity. LAMP-LFB detection limit for artificially contaminated samples after enrichment for 16 h was 1–10 CFU/g sample, which was comparable to the commercial real-time PCR kit. The detection performance of LAMP-LFB was also compared to culture-based method using 95 food samples, which revealed the sensitivity (SE), specificity (SP) and Cohen's kappa coefficient (κ) of 88.0% (95% CI, 75.6%-95.4%), 95.5% (95% CI, 84.8%-99.4%) and 0.832 (95% CI, 0.721–0.943), respectively. Area under the receiver operating characteristic (ROC) curve was 0.918 (95% CI, 0.854–0.981), indicating LAMP-LFB as high relative accuracy test. In conclusion, LAMP-LFB assay is a low-cost qualitative method and easily available for routine detection of C. perfringens in food samples, which could serve as an alternative to commercial test kit.



中文翻译:

环介导的等温扩增结合侧向流生物传感器快速检测食品中的产气荚膜梭菌

产气荚膜梭状芽胞杆菌是导致食物中毒的关键厌氧性病原体。用标准培养方法进行确定的检测是费时且费力的。当前的快速商业测试套件非常昂贵。因此,有必要开发一种快速且具有成本效益的检测工具。在此,在与侧流生物传感器(LFB)组合环介导等温扩增(LAMP)被用于视觉检查开发Ç产气荚膜特异性cpa基因。针对40 C评估开发的测试的特异性。产气荚膜菌其他35个细菌菌株没有交叉反应,表明包容性和排他性均为100%。富集16 h后,人工污染样品的LAMP-LFB检测极限为1–10 CFU / g样品,与商业实时PCR试剂盒相当。还比较了LAMP-LFB的检测性能与基于培养的方法(使用95个食品样品的检测方法)的敏感性,结果显示,其灵敏度(SE),特异性(SP)和科恩卡伯系数(κ)为88.0%(95%CI,75.6%- 95.4%),95.5%(95%CI,84.8%-99.4%)和0.832(95%CI,0.721-0.943)。接收器工作特性(ROC)曲线下的面积为0.918(95%CI,0.854-0.981),表明LAMP-LFB是高相对精度测试。总之,LAMP-LFB测定是一种低成本的定性方法,可轻松用于常规检测Ç。食品样品中的香水成分,可作为商业检测试剂盒的替代品。

更新日期:2021-01-07
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