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Epigenetic analysis of Paget's disease of bone identifies differentially methylated loci that predict disease status
bioRxiv - Molecular Biology Pub Date : 2021-01-05 , DOI: 10.1101/2021.01.04.425216
Ilhame Diboun , Sachin Wani , Stuart H Ralston , Omar M E Albagha

Paget's Disease of Bone (PDB) is characterized by focal increases in disorganized bone remodeling. This study aims to characterize PDB associated changes in DNA methylation profiles in patients' blood. Meta-analysis of data from the discovery and replication set, comprising of 116 PDB cases and 130 controls, revealed significant differences in DNA methylation at 14 CpG sites, 4 CpG islands, and 6 gene-body regions. These loci, including two characterized as functional through eQTM analysis, were associated with functions related to osteoclast differentiation, mechanical loading, immune function, and viral infection. A multivariate classifier based on discovery samples was found to discriminate PDB cases and controls from the replication with a sensitivity of 0.84, specificity of 0.81, and an area under curve of 92.8%. In conclusion, this study has shown for the first time that epigenetic factors contribute to the pathogenesis of PDB and may offer diagnostic markers for prediction of the disease.

中文翻译:

Paget骨疾病的表观遗传学分析可识别预测疾病状态的差异甲基化基因座

佩吉特氏骨病(PDB)的特征在于混乱的骨骼重塑的局灶性增加。这项研究旨在表征患者血液中PDB相关的DNA甲基化分布变化。来自发现和复制集的数据的荟萃分析包括116个PDB病例和130个对照,发现14个CpG位点,4个CpG岛和6个基因体区域的DNA甲基化存在显着差异。这些基因座,包括通过eQTM分析表征为功能性的两个基因座,与破骨细胞分化,机械负荷,免疫功能和病毒感染有关。发现基于发现样本的多元分类器可将PDB病例和对照与复制区分开,灵敏度为0.84,特异性为0.81,曲线下面积为92.8%。结论,
更新日期:2021-01-06
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