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Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity
Cell ( IF 64.5 ) Pub Date : 2020-11-19 , DOI: 10.1016/j.cell.2020.11.020
Erik Volz 1 , Verity Hill 2 , John T McCrone 2 , Anna Price 3 , David Jorgensen 1 , Áine O'Toole 2 , Joel Southgate 4 , Robert Johnson 1 , Ben Jackson 2 , Fabricia F Nascimento 1 , Sara M Rey 5 , Samuel M Nicholls 6 , Rachel M Colquhoun 2 , Ana da Silva Filipe 7 , James Shepherd 7 , David J Pascall 8 , Rajiv Shah 7 , Natasha Jesudason 7 , Kathy Li 7 , Ruth Jarrett 7 , Nicole Pacchiarini 5 , Matthew Bull 5 , Lily Geidelberg 1 , Igor Siveroni 1 , 9 , Ian Goodfellow 10 , Nicholas J Loman 6 , Oliver G Pybus 11 , David L Robertson 7 , Emma C Thomson 7 , Andrew Rambaut 2 , Thomas R Connor 12
Affiliation  

Global dispersal and increasing frequency of the SARS-CoV-2 spike protein variant D614G are suggestive of a selective advantage but may also be due to a random founder effect. We investigate the hypothesis for positive selection of spike D614G in the United Kingdom using more than 25,000 whole genome SARS-CoV-2 sequences. Despite the availability of a large dataset, well represented by both spike 614 variants, not all approaches showed a conclusive signal of positive selection. Population genetic analysis indicates that 614G increases in frequency relative to 614D in a manner consistent with a selective advantage. We do not find any indication that patients infected with the spike 614G variant have higher COVID-19 mortality or clinical severity, but 614G is associated with higher viral load and younger age of patients. Significant differences in growth and size of 614G phylogenetic clusters indicate a need for continued study of this variant.



中文翻译:

评估 SARS-CoV-2 尖峰突变 D614G 对传播性和致病性的影响

SARS-CoV-2 刺突蛋白变体 D614G 的全球扩散和频率增加暗示了选择性优势,但也可能是由于随机创始人效应。我们使用超过 25,000 个全基因组 SARS-CoV-2 序列研究了在英国阳性选择尖峰 D614G 的假设。尽管有一个大数据集的可用性,由两个尖峰 614 变体很好地代表,但并非所有方法都显示出肯定选择的决定性信号。群体遗传分析表明,相对于 614D,614G 的频率以与选择性优势一致的方式增加。我们没有发现任何迹象表明感染尖峰 614G 变体的患者具有更高的 COVID-19 死亡率或临床严重程度,但 614G 与更高的病毒载量和患者年龄较小有关。

更新日期:2021-01-07
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