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Rhodocytophaga rosea sp. nov. and Nibribacter ruber sp. nov., two radiation-resistant bacteria isolated from soil
Antonie van Leeuwenhoek ( IF 1.8 ) Pub Date : 2020-11-02 , DOI: 10.1007/s10482-020-01488-1
Yuna Park 1 , Soohyun Maeng 1 , Joo Hyun Han 1 , Sang Eun Lee 1 , Jing Zhang 2 , Min-Kyu Kim 2 , In-Tae Cha 3 , Ki-Eun Lee 3 , Byoung-Hee Lee 3 , Myung Kyum Kim 1
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Two bacterial strains, 172606-1T and BT10T, were isolated from soil, Korea. Both strains were Gram-stain-negative and rod-shaped bacteria. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain 172606-1T formed a distinct lineage within the family Cytophagaceae (order Cytophagales, class Cytophagia, phylum Bacteroidetes). Strain 172606-1T was most closely related to a member of the genus Rhodocytophaga (93.8% 16S rRNA gene sequence similarity to Rhodocytophaga aerolata 5416T-29T). The complete genome sequence of strain 172606-1T is 8,983,451 bp size. Optimal growth occurred at 25 °C and pH 7.0 without NaCl. The major cellular fatty acids were identified as iso-C15:0 and C16:1 ω5c. The major respiratory quinone was MK-7. The major polar lipid was phosphatidylethanolamine. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain BT10T belongs to the genus Nibribacter and is closely related to Nibribacter koreensis GSR 3061T (96.5%), Rufibacter glacialis MDT1-10-3T (95.7%), Rufibacter sediminis H-1T (95.1%) and Rufibacter quisquiliarum CAI-18bT (94.9%). The complete genome sequence of strain BT10T is 4,374,810 bp size. The predominant (> 10%) cellular fatty acids of strain BT10T were iso-C15:0 and summed feature 4 (anteiso-C17:1 B/iso-C17:1 I) and a predominant quinone was MK-7. In addition, strain BT10T has phosphatidylethanolamine (PE) as the major polar lipid. On the basis of biochemical, chemotaxonomic and phylogenetic analyses, strain 172606-1T represents a novel bacterial species of the genus Rhodocytophaga, for which the name Rhodocytophaga rosea is proposed and strain BT10T represents a novel species of the genus Nibribacter, for which the name Nibribacter ruber is proposed. The type strains of Rhodocytophaga rosea and Nibribacter ruber are 172606-1T (= KCTC 62096T = NBRC 114410T) and BT10T (= KCTC 62607T = NBRC 114383T), respectively.



中文翻译:

Rhodocytophaga rosea sp. 十一月 和 Nibribacter ruber sp。11月,从土壤中分离出两种抗辐射细菌

从韩国土壤中分离出两种细菌菌株 172606-1 T和 BT10 T。两种菌株均为革兰氏染色阴性和杆状细菌。基于 16S rRNA 基因序列的系统发育分析表明,菌株 172606-1 T噬菌科(Cytophagales 目Cytophagia类,拟杆菌门)内形成了一个独特的谱系。菌株 172606-1 T嗜红嗜血菌属( Rhodocytophaga aerolata 5416T-29 T )的成员最密切相关(93.8% 16S rRNA 基因序列相似性)。菌株172606-1的全基因组序列T是 8,983,451 bp 大小。最佳生长发生在 25 °C 和 pH 7.0 且不含 NaCl。主要的细胞脂肪酸被鉴定为iso-C 15:0和C 16:1 ω 5 c。主要的呼吸醌是MK-7。主要的极性脂质是磷脂酰乙醇胺。系统发育分析基于16S rRNA基因序列表明,菌株BT10 Ť属于埃希Nibribacter和密切相关Nibribacter koreensis GSR 3061 Ť(96.5%),Rufibacter冰川MDT1-10-3 Ť(95.7%),Rufibacter sediminis H- 1(95.1%) 和Rufibacter quisquiliarum CAI-18b T (94.9%)。菌株 BT10 T的完整基因组序列为 4,374,810 bp 大小。BT10 T菌株的主要 (> 10%) 细胞脂肪酸是 iso-C 15:0和总和特征 4 (anteiso-C 17:1 B/iso-C 17:1 I),主要的醌是 MK-7 . 此外,菌株 BT10 T具有磷脂酰乙醇胺 (PE) 作为主要的极性脂质。生化,化学分类和系统发育分析的基础上,应变172606-1 Ť表示属的新的细菌物种Rhodocytophaga,为此,名称Rhodocytophaga糠疹提出了 BT10 T菌株代表了Nibribacter属的一个新物种,建议将其命名为Nibribacter ruberRhodocytophaga roseaNibribacter ruber的类型菌株分别为 172606-1 T (= KCTC 62096 T  = NBRC 114410 T ) 和 BT10 T (= KCTC 62607 T  = NBRC 114383 T )。

更新日期:2020-11-02
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