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Matrix‐dependent a/x pair and overdegraded w/y/z ions generated by radical‐directed dissociation of peptide radical cations [M]+ in matrix‐assisted laser desorption/ionization in‐source decay
Journal of Mass Spectrometry ( IF 1.9 ) Pub Date : 2020-10-20 , DOI: 10.1002/jms.4668
Kei Miyazawa 1 , Mitsuo Takayama 1
Affiliation  

Fragmentation of peptide radical cations [M].+ has been examined using matrix‐assisted laser desorption/ionization (MALDI) in‐source decay (ISD) with hydrogen‐abstracting nitro‐substituted matrices. The ISD spectra of peptides containing an arginine (Arg) residue at carboxyl (C)‐termini showed preferential [w]+ ions when 4‐nitro‐1‐naphthol (4,1‐NNL) matrix was used, whereas the use of 3,5‐dinitrosalicylic acid (3,5‐DNSA) resulted in preferential [x]+ ions. Minor or some [d]+, [x]+, [y]+, and [z]+ ions were also observed. For peptides containing Arg residue at amino (N)‐termini, the ISD spectra showed preferential [a]+ ions independent of matrix used. The observed [a]+, [w]+, [x]+, [y]+, and [z]+ ions can be rationally explained by radical‐directed dissociation (RDD) of the peptide radical cations [M].+, although [d]+ ions may be formed via Norrish Type I cleavage and/or by RDD of [M].+ ions. The formation of overdegraded [d]+, [w]+, [y]+, and [z]+ ions is discussed from the standpoint of the internal energy of radical cations [M].+ and radical fragment ions [a + H].+ and [x + H].+ deposited via collisional interactions with excited matrix molecules in the MALDI plume. The radical site of the peptide cations [M].+ was presumed to be backbone amide nitrogen, from MALDI‐ISD data with three different deuterated amino acids.

中文翻译:

基质辅助的激光解吸/电离源内衰变中肽自由基阳离子[M] +的自由基定向解离产生的依赖于基质的a / x对和过度降解的w / y / z离子

肽自由基阳离子的断裂[M] +已使用具有氢吸收性硝基取代基质的基质辅助激光解吸/电离(MALDI)源衰减(ISD)进行了检验。当使用4-硝基-1-萘酚(4,1-NNL)基质时,在羧基(C)-末端含有精氨酸(Arg)残基的肽的ISD谱显示优先[ w ] +离子,而使用3 ,5-二硝基水杨酸(3,5-DNSA)产生优先[ x ] +离子。次要或某些[ d ] +,[ x ] +,[ y ] +和[ z ] +还观察到离子。对于在氨基(N)-末端含有Arg残基的肽,ISD光谱显示优先[ a ] +离子,与所用基质无关。观察到的[ a ] +,[ w ] +,[ x ] +,[ y ] +和[ z ] +离子可以通过肽自由基阳离子[M]的自由基定向解离(RDD)进行合理解释+,尽管[ d ] +离子可通过Norrish I型裂解和/或[M]的RDD形成+离子。从自由基阳离子的内能角度探讨了[ d ] +,[ w ] +,[ y ] +和[ z ] +离子的降解[M] +和自由基碎片离子[ a + H] +和[ x + H] +通过与MALDI羽中的激发基质分子的碰撞相互作用而沉积。肽阳离子的自由基位点[M] + 根据MALDI-ISD数据中的三种不同的氘代氨基酸,推测其为骨架酰胺氮。
更新日期:2020-11-02
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