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TRex, a fast multi-animal tracking system with markerless identification, and 2D estimation of posture and visual fields
bioRxiv - Animal Behavior and Cognition Pub Date : 2021-02-23 , DOI: 10.1101/2020.10.14.338996
Tristan Walter , Iain D Couzin

Automated visual tracking of animals is rapidly becoming an indispensable tool for the study of behavior. It offers a quantitative methodology by which organisms' sensing and decision-making can be studied in a wide range of ecological contexts. Despite this, existing solutions tend to be challenging to deploy in practice, especially when considering long and/or high-resolution video-streams. Here, we present TRex, a fast and easy-to-use solution for tracking a large number of individuals simultaneously using background-subtraction with real-time (60Hz) tracking performance for up to approximately 256 individuals and estimates 2D visual-fields, outlines, and head/rear of bilateral animals, both in open and closed-loop contexts. Additionally, TRex offers highly-accurate, deep-learning-based visual identification of up to approximately 100 unmarked individuals, where it is between 2.5-46.7 times faster, and requires 2-10 times less memory, than comparable software (with relative performance increasing for more organisms/longer videos) and provides interactive data-exploration within an intuitive, platform-independent graphical user-interface.

中文翻译:

TRex,一种快速的多动物跟踪系统,具有无标记识别以及姿势和视野的2D估计

动物的自动视觉跟踪正迅速成为行为研究中必不可少的工具。它提供了一种定量方法,可以在广泛的生态环境中研究生物的感知和决策。尽管如此,现有解决方案在实践中往往难以部署,特别是在考虑长和/或高分辨率视频流时。在这里,我们介绍TRex,这是一种快速且易于使用的解决方案,用于通过背景扣除与实时(60Hz)跟踪性能同时跟踪大量个体,最多可跟踪约256个个体,并估计2D视野,轮廓,以及开环和闭环环境中的双边动物的头/尾。此外,TRex还提供高精度,
更新日期:2021-02-24
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