当前位置: X-MOL 学术BMC Bioinform. › 论文详情
Our official English website, www.x-mol.net, welcomes your feedback! (Note: you will need to create a separate account there.)
Raman2imzML converts Raman imaging data into the standard mass spectrometry imaging format
BMC Bioinformatics ( IF 2.9 ) Pub Date : 2020-10-09 , DOI: 10.1186/s12859-020-03789-8
Stefania Alexandra Iakab , Lluc Sementé , María García-Altares , Xavier Correig , Pere Ràfols

Multimodal imaging that combines mass spectrometry imaging (MSI) with Raman imaging is a rapidly developing multidisciplinary analytical method used by a growing number of research groups. Computational tools that can visualize and aid the analysis of datasets by both techniques are in demand. Raman2imzML was developed as an open-source converter that transforms Raman imaging data into imzML, a standardized common data format created and adopted by the mass spectrometry community. We successfully converted Raman datasets to imzML and visualized Raman images using open-source software designed for MSI applications. Raman2imzML enables both MSI and Raman images to be visualized using the same file format and the same software for a straightforward exploratory imaging analysis.

中文翻译:

Raman2imzML将拉曼成像数据转换为标准质谱成像格式

将质谱成像(MSI)与拉曼成像相结合的多峰成像是一种快速发展的多学科分析方法,越来越多的研究小组使用该方法。需要能够通过这两种技术可视化和辅助数据集分析的计算工具。Raman2imzML是作为开源转换器开发的,可以将拉曼成像数据转换为imzML,这是质谱界创建和采用的标准化通用数据格式。我们使用专为MSI应用程序设计的开源软件成功地将拉曼数据集转换为imzML并可视化了拉曼图像。Raman2imzML使MSI和Raman图像都可以使用相同的文件格式和相同的软件进行可视化,以进行简单的探索性成像分析。
更新日期:2020-10-11
down
wechat
bug