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The VCBS superfamily, a diverse group of β-propellers that includes tachylectin and integrins
bioRxiv - Molecular Biology Pub Date : 2020-10-09 , DOI: 10.1101/2020.10.09.333302
Joana Pereira , Andrei N. Lupas

β-Propellers are found in great variety across all kingdoms of life. They assume many cellular roles, primarily as scaffolds for macromolecular interactions and catalysis. Despite their diversity, most β-propeller families clearly originated by amplification from the same ancient peptide - the β-propeller blade. In cluster analyses, β-propellers of the WD40 superfamily always formed the largest group, to which some important families, such as the α-integrin, Asp-box, and glycoside hydrolase β-propellers connected weakly. Motivated by the dramatic growth of sequence databases we revisited these connections, with a special focus on VCBS-like β-propellers, which have not been analysed for their evolutionary relationships so far. We found that they form a supercluster with integrin-like β-propellers and tachylectins, clearly delimited from the superclusters formed by WD40 and Asp-Box β-propeller. Connections between the three superclusters are made mainly through PQQ-like β-propeller. Our results present a new, greatly expanded view of the β-propeller classification landscape.

中文翻译:

VCBS超家族,包括速激肽和整联蛋白的各种β螺旋桨组

在所有生命王国中都发现了β螺旋桨。它们承担许多细胞作用,主要是作为大分子相互作用和催化的支架。尽管它们具有多样性,但大多数β螺旋桨家族显然是通过扩增来自同一古老肽-β螺旋桨叶片而产生的。在聚类分析中,WD40超家族的β螺旋桨始终形成最大的群体,其中一些重要的家族(例如α-整联蛋白,Asp-box和糖苷水解酶β螺旋桨)之间的连接较弱。由于序列数据库的迅速发展,我们重新审视了这些联系,并特别关注类似于VCBS的β螺旋桨,到目前为止,尚未对其进化关系进行分析。我们发现它们与整合素样β-螺旋桨和速激肽形成超簇,显然与WD40和Asp-Boxβ螺旋桨形成的超级集群是有界的。三个超级集群之间的连接主要通过类似PQQ的β螺旋桨进行。我们的结果提出了一个新的,大大扩展的β螺旋桨分类图。
更新日期:2020-10-11
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