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Construction of single-deletion-correcting DNA codes using CIS codes
Designs, Codes and Cryptography ( IF 1.6 ) Pub Date : 2020-09-25 , DOI: 10.1007/s10623-020-00802-2
Whan-Hyuk Choi , Hyun Jin Kim , Yoonjin Lee

We find a method for constructing DNA codes with single-deletion-correcting capability. We first present an explicit algorithm for the construction of the q-ary single-deletion-correcting codes (abbreviated as SDC codes) using a class of the complementary information set codes (abbreviated as CIS codes), where q is a power of a prime. We then show that the encoding/decoding scheme of the CIS codes with single-deletion-correcting capability has a simple deterministic algorithm. Finally, applying our algorithm to the generated DNA codes with appropriate modification, we obtain the DNA codes with single-deletion-correcting capability. We present some various examples of such DNA codes, and we also obtain some lower bounds on the maximum size of the single-deletion-correcting DNA codes.

中文翻译:

使用CIS编码构建单删改DNA编码

我们找到了一种构建具有单删除纠正能力的 DNA 代码的方法。我们首先提出了一种使用一类互补信息集代码(缩写为 CIS 代码)构建 q 元单删除校正代码(缩写为 SDC 代码)的显式算法,其中 q 是素数的幂. 然后我们展示了具有单删除纠正能力的 CIS 代码的编码/解码方案具有简单的确定性算法。最后,将我们的算法应用于生成的 DNA 代码,并进行适当的修改,我们得到具有单删除纠正能力的 DNA 代码。我们展示了一些此类 DNA 代码的各种示例,并且我们还获得了单删除校正 DNA 代码的最大大小的一些下限。
更新日期:2020-09-25
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