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Trans-ancestry genetic study of type 2 diabetes highlights the power of diverse populations for discovery and translation
medRxiv - Genetic and Genomic Medicine Pub Date : 2020-09-23 , DOI: 10.1101/2020.09.22.20198937
Anubha Mahajan , Cassandra N Spracklen , Weihua Zhang , Maggie CY Ng , Lauren E Petty , Hidetoshi Kitajima , Grace Z Yu , Sina Rueger , Leo Speidel , Young Jin Kim , Momoko Horikoshi , Josep M Mercader , Daniel Taliun , Sanghoon Moon , Soo-Heon Kwak , Neil R Robertson , Nigel W Rayner , Marie Loh , Bong-Jo Kim , Joshua Chiou , Irene Miguel-Escalada , Pietro della Briotta Parolo , Kuang Lin , Fiona Bragg , Michael H Preuss , Fumihiko Takeuchi , Jana Nano , Xiuqing Guo , Amel Lamri , Masahiro Nakatochi , Robert A Scott , Jung-Jin Lee , Alicia Huerta-Chagoya , Mariaelisa Graff , Jin-Fang Chai , Esteban J Parra , Jie Yao , Lawrence F Bielak , Yasuharu Tabara , Yang Hai , Valgerdur Steinthorsdottir , James P Cook , Mart Kals , Niels Grarup , Ellen M Schmidt , Ian Pan , Tamar Sofer , Matthias Wuttke , Chloe Sarnowski , Christian Gieger , Darryl Nousome , Stella Trompet , Jirong Long , Meng Sun , Lin Tong , Wei-Min Chen , Meraj Ahmad , Raymond Noordam , Victor JY Lim , Claudia HT Tam , Yoonjung Yoonie Joo , Chien-Hsiun Chen , Laura M Raffield , Cecile Lecoeur , Nisa M Maruthur , Bram Peter Prins , Aude Nicolas , Lisa R Yanek , Guanjie Chen , Richard A Jensen , Salman Tajuddin , Edmond Kabagambe , Ping An , Anny H Xiang , Hyeok Sun Choi , Brian E Cade , Jingyi Tan , Fernando Abaitua , Linda S Adair , Adebowale Adeyemo , Carlos A Aguilar-Salinas , Masato Akiyama , Sonia S Anand , Alain Bertoni , Zheng Bian , Jette Bork-Jensen , Ivan Brandslund , Jennifer A Brody , Chad M Brummett , Thomas A Buchanan , Mickael Canouil , Juliana CN Chan , Li-Ching Chang , Miao-Li Chee , Ji Chen , Shyh-Huei Chen , Yuan-Tsong Chen , Zhengming Chen , Lee-Ming Chuang , Mary Cushman , Swapan K Das , H. Janaka de Silva , George Dedoussis , Latchezar Dimitrov , Ayo P Doumatey , Shufa Du , Qing Duan , Kai-Uwe Eckardt , Leslie S Emery , Daniel S Evans , Michele K Evans , Krista Fischer , James S Floyd , Ian Ford , Myriam Fornage , Oscar H Franco , Timothy M Frayling , Barry I Freedman , Christian Fuchsberger , Pauline Genter , Hertzel C Gerstein , Vilmantas Giedraitis , Clicerio Gonzalez-Villalpando , Maria Elena Gonzalez-Villalpando , Mark O Goodarzi , Penny Gordon-Larsen , David Gorkin , Myron Gross , Yu Guo , Sophie Hackinger , Sohee Han , Andrew T Hattersley , Christian Herder , Annie-Green Howard , Willa Hsueh , Mengna Huang , Wei Huang , Yi-Jen Hung , Mi Yeong Hwang , Chii-Min Hwu , Sahoko Ichihara , Mohammad Arfan Ikram , Martin Ingelsson , Md. Tariqul Islam , Masato Isono , Hye-Mi Jang , Farzana Jasmine , Guozhi Jiang , Jost B Jonas , Marit E Jorgensen , Torben Jorgensen , Yoichiro Kamatani , Fouad R Kandeel , Anuradhani Kasturiratne , Tomohiro Katsuya , Varinderpal Kaur , Takahisa Kawaguchi , Jacob M Keaton , Abel N Kho , Chiea-Chuen Khor , Muhammad G Kibriya , Duk-Hwan Kim , Katsuhiko Kohara , Jennifer Kriebel , Florian Kronenberg , Johanna Kuusisto , Kristi Lall , Leslie A Lange , Myung-Shik Lee , Nanette R Lee , Aaron Leong , Liming Li , Yun Li , Ruifang Li-Gao , Symen Ligthart , Cecilia M Lindgren , Allan Linneberg , Ching-Ti Liu , Jianjun Liu , Adam E Locke , Tin Louie , Jian'an Luan , Andrea O Luk , Xi Luo , Jun Lv , Valeriya Lyssenko , Vasiliki Mamakou , K Radha Mani , Thomas Meitinger , Andres Metspalu , Andrew D Morris , Girish N. Nadkarni , Jerry L Nadler , Michael A Nalls , Uma Nayak , Ioanna Ntalla , Yukinori Okada , Lorena Orozco , Sanjay R Patel , Mark A Pereira , Annette Peters , Fraser J Pirie , Bianca Porneala , Gauri Prasad , Sebastian Preissl , Laura J Rasmussen-Torvik , Alexander P Reiner , Michael Roden , Rebecca Rohde , Katheryn Roll , Charumathi Sabanayagam , Maike Sander , Kevin Sandow , Naveed Sattar , Sebastian Schonherr , Claudia Schurmann , Mohammad Shahriar , Jinxiu Shi , Dong Mun Shin , Daniel Shriner , Jennifer A Smith , Wing Yee So , Alena Stancakova , Adrienne M Stilp , Konstantin Strauch , Ken Suzuki , Atsushi Takahashi , Kent D Taylor , Barbara Thorand , Gudmar Thorleifsson , Unnur Thorsteinsdottir , Brian Tomlinson , Jason M Torres , Fuu-Jen Tsai , Jaakko Tuomilehto , Teresa Tusie-Luna , Miriam S Udler , Adan Valladares-Salgado , Rob M van Dam , Jan B van Klinken , Rohit Varma , Marijana Vujkovic , Niels Wacher-Rodarte , Ellie Wheeler , Eric A Whitsel , Ananda R Wickremasinghe , Konstantin Willems van Dijk , Daniel R Witte , Yong-Bing Xiang , Chittaranjan S Yajnik , Ken Yamamoto , Toshimasa Yamauchi , Loic Yengo , Kyungheon Yoon , Canqing Yu , Jian-Min Yuan , Salim Yusuf , Liang Zhang , Wei Zheng , Leslie J Raffel , Michiya Igase , Eli Ipp , Susan Redline , Yoon Shin Cho , Lars Lind , Michael A Province , Craig L Hanis , Patricia A Peyser , Erik Ingelsson , Alan B Zonderman , Bruce M Psaty , Ya-Xing Wang , Charles N Rotimi , Diane M Becker , Fumihiko Matsuda , Yongmei Liu , Eleftheria Zeggini , Mitsuhiro Yokota , Stephen S Rich , Charles Kooperberg , James S Pankow , James C Engert , Yii-Der Ida Chen , Philippe Froguel , James G Wilson , Wayne HH Sheu , Sharon LR Kardia , Jer-Yuarn Wu , M Geoffrey Hayes , Ronald CW Ma , Tien-Yin Wong , Leif Groop , Dennis O Mook-Kanamori , Giriraj R Chandak , Francis S Collins , Dwaipayan Bharadwaj , Guillaume Pare , Michele M Sale , Habibul Ahsan , Ayesha A Motala , Xiao-Ou Shu , Kyong-Soo Park , J Wouter Jukema , Miguel Cruz , Roberta McKean-Cowdin , Harald Grallert , Ching-Yu Cheng , Erwin P Bottinger , Abbas Dehghan , E-Shyong Tai , Josee Dupuis , Norihiro Kato , Markku Laakso , Anna Kottgen , Woon-Puay Koh , Colin NA Palmer , Simin Liu , Goncalo Abecasis , Jaspal S Kooner , Ruth JF Loos , Kari E North , Christopher A Haiman , Jose C Florez , Danish Saleheen , Torben Hansen , Oluf Pedersen , Reedik Magi , Claudia Langenberg , Nicholas J Wareham , Shiro Maeda , Takashi Kadowaki , Juyoung Lee , Iona Y Millwood , Robin G Walters , Kari Stefansson , Simon R Myers , Jorge Ferrer , Kyle J Gaulton , James B Meigs , Karen L Mohlke , Anna L Gloyn , Donald W Bowden , Jennifer E Below , John C Chambers , Xueling Sim , Michael Boehnke , Jerome I Rotter , Mark I McCarthy , Andrew P Morris

We assembled an ancestrally diverse collection of genome-wide association studies of type 2 diabetes (T2D) in 180,834 cases and 1,159,055 controls (48.9% non-European descent). We identified 277 loci at genome-wide significance (p<5x10-8), including 237 attaining a more stringent trans-ancestry threshold (p<5x10-9), which were delineated to 338 distinct association signals. Trans-ancestry meta-regression offered substantial enhancements to fine-mapping, with 58.6% of associations more precisely localised due to population diversity, and 54.4% of signals resolved to a single variant with >50% posterior probability. This improved fine-mapping enabled systematic assessment of candidate causal genes and molecular mechanisms through which T2D associations are mediated, laying foundations for functional investigations. Trans-ancestry genetic risk scores enhanced transferability across diverse populations, providing a step towards more effective clinical translation to improve global health.

中文翻译:

2类糖尿病的跨祖先遗传研究突出了不同人群发现和翻译的能力

我们收集了180,834例病例和1,159,055例对照(48.9%的非欧洲血统)的祖先多样化的2型糖尿病(T2D)全基因组关联研究集合。我们在全基因组意义上鉴定了277个基因座(p <5x10-8),包括237个达到更严格的先祖阈值(p <5x10-9),这些基因座被描述为338个不同的关联信号。跨祖先的元回归极大地增强了精细映射,由于人口多样性,58.6%的关联更精确地定位,54.4%的信号解析为单个变异的后验概率> 50%。这种改进的精细映射可以系统评估候选病因基因和介导T2D关联的分子机制,从而为功能研究奠定基础。
更新日期:2020-09-23
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