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CHESPA/CHESCA-SPARKY: automated NMR data analysis plugins for SPARKY to map protein allostery
Bioinformatics ( IF 5.8 ) Pub Date : 2020-11-10 , DOI: 10.1093/bioinformatics/btaa781
Hongzhao Shao 1 , Stephen Boulton 2 , Cristina Olivieri 3 , Hebatallah Mohamed 1 , Madoka Akimoto 1 , Manu Veliparambil Subrahmanian 3 , Gianluigi Veglia 3, 4 , John L Markley 5 , Giuseppe Melacini 1, 2 , Woonghee Lee 5, 6
Affiliation  

Correlated Nuclear Magnetic Resonance (NMR) chemical shift changes identified through the CHEmical Shift Projection Analysis (CHESPA) and CHEmical Shift Covariance Analysis (CHESCA) reveal pathways of allosteric transitions in biological macromolecules. To address the need for an automated platform that implements CHESPA and CHESCA and integrates them with other NMR analysis software packages, we introduce here integrated plugins for NMRFAM-SPARKY that implement the seamless detection and visualization of allosteric networks.

中文翻译:

CHESPA/CHESCA-SPARKY:用于 SPARKY 的自动 NMR 数据分析插件,用于绘制蛋白质变构图

通过化学位移投影分析 (CHESPA) 和化学位移协方差分析 (CHEsCA) 确定的相关核磁共振 (NMR) 化学位移变化揭示了生物大分子变构转换的途径。为了满足对实现 CHESPA 和 CHESCA 并将它们与其他 NMR 分析软件包集成的自动化平台的需求,我们在此引入了 NMRFAM-SPARKY 的集成插件,这些插件实现了变构网络的无缝检测和可视化。
更新日期:2020-11-10
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