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Analysis of single-cell transcriptomes links enrichment of olfactory receptors with cancer cell differentiation status and prognosis.
Communications Biology ( IF 5.2 ) Pub Date : 2020-09-11 , DOI: 10.1038/s42003-020-01232-5
Siddhant Kalra 1 , Aayushi Mittal 1 , Krishan Gupta 1, 2 , Vrinda Singhal 1 , Anku Gupta 2 , Tripti Mishra 3 , Srivatsava Naidu 4 , Debarka Sengupta 1, 2, 5, 6 , Gaurav Ahuja 1
Affiliation  

Ectopically expressed olfactory receptors (ORs) have been linked with multiple clinically-relevant physiological processes. Previously used tissue-level expression estimation largely shadowed the potential role of ORs due to their overall low expression levels. Even after the introduction of the single-cell transcriptomics, a comprehensive delineation of expression dynamics of ORs in tumors remained unexplored. Our targeted investigation into single malignant cells revealed a complex landscape of combinatorial OR expression events. We observed differentiation-dependent decline in expressed OR counts per cell as well as their expression intensities in malignant cells. Further, we constructed expression signatures based on a large spectrum of ORs and tracked their enrichment in bulk expression profiles of tumor samples from The Cancer Genome Atlas (TCGA). TCGA tumor samples stratified based on OR-centric signatures exhibited divergent survival probabilities. In summary, our comprehensive analysis positions ORs at the cross-road of tumor cell differentiation status and cancer prognosis.



中文翻译:

单细胞转录组分析将嗅觉受体的富集与癌细胞分化状态和预后联系起来。

异位表达的嗅觉受体 (OR) 与多种临床相关的生理过程有关。以前使用的组织水平表达估计在很大程度上掩盖了 ORs 的潜在作用,因为它们的整体表达水平较低。即使在引入单细胞转录组学之后,对肿瘤中 OR 表达动态的全面描述仍未得到探索。我们对单个恶性细胞的有针对性的研究揭示了组合 OR 表达事件的复杂情况。我们观察到每个细胞表达的 OR 计数及其在恶性细胞中的表达强度的分化依赖性下降。更远,我们基于大范围的 OR 构建了表达特征,并跟踪了它们在来自癌症基因组图谱 (TCGA) 的肿瘤样本的大量表达谱中的富集情况。基于 OR 中心特征分层的 TCGA 肿瘤样本表现出不同的生存概率。总之,我们的综合分析将 OR 定位在肿瘤细胞分化状态和癌症预后的十字路口。

更新日期:2020-09-11
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