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A sparse deep learning approach for automatic segmentation of human vasculature in multispectral optoacoustic tomography
Photoacoustics ( IF 7.1 ) Pub Date : 2020-09-10 , DOI: 10.1016/j.pacs.2020.100203
Nikolaos-Kosmas Chlis 1, 2, 3 , Angelos Karlas 2, 4, 5, 6 , Nikolina-Alexia Fasoula 2, 4 , Michael Kallmayer 6 , Hans-Henning Eckstein 6 , Fabian J Theis 1, 7 , Vasilis Ntziachristos 2, 4, 5 , Carsten Marr 1
Affiliation  

Multispectral Optoacoustic Tomography (MSOT) resolves oxy- (HbO2) and deoxy-hemoglobin (Hb) to perform vascular imaging. MSOT suffers from gradual signal attenuation with depth due to light-tissue interactions: an effect that hinders the precise manual segmentation of vessels. Furthermore, vascular assessment requires functional tests, which last several minutes and result in recording thousands of images. Here, we introduce a deep learning approach with a sparse-UNET (S-UNET) for automatic vascular segmentation in MSOT images to avoid the rigorous and time-consuming manual segmentation. We evaluated the S-UNET on a test-set of 33 images, achieving a median DICE score of 0.88. Apart from high segmentation performance, our method based its decision on two wavelengths with physical meaning for the task-at-hand: 850 nm (peak absorption of oxy-hemoglobin) and 810 nm (isosbestic point of oxy-and deoxy-hemoglobin). Thus, our approach achieves precise data-driven vascular segmentation for automated vascular assessment and may boost MSOT further towards its clinical translation.



中文翻译:


多光谱光声断层扫描中人体脉管系统自动分割的稀疏深度学习方法



多光谱光声断层扫描 (MSOT) 解析氧合血红蛋白 (HbO 2 ) 和脱氧血红蛋白 (Hb) 以进行血管成像。由于光-组织相互作用,MSOT 会随着深度的增加而逐渐衰减信号:这种效应阻碍了血管的精确手动分割。此外,血管评估需要功能测试,该测试持续几分钟并记录数千张图像。在这里,我们引入了一种使用稀疏 UNET (S-UNET) 的深度学习方法,用于 MSOT 图像中的自动血管分割,以避免严格且耗时的手动分割。我们在 33 张图像的测试集上评估了 S-UNET,获得了 0.88 的中位 DICE 分数。除了高分割性能之外,我们的方法还基于对当前任务具有物理意义的两个波长进行决策:850 nm(氧合血红蛋白的峰值吸收)和 810 nm(氧合和脱氧血红蛋白的等吸光点)。因此,我们的方法实现了精确的数据驱动血管分割,用于自动血管评估,并可能进一步推动 MSOT 走向临床转化。

更新日期:2020-11-02
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