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Establishment of an SYBR Green-based real-time PCR assay for porcine circovirus type 4 detection.
Journal of Virological Methods ( IF 3.1 ) Pub Date : 2020-08-31 , DOI: 10.1016/j.jviromet.2020.113963
Da Zhang 1 , Caixia Bai 1 , Kai Ge 2 , Yongdong Li 3 , Wenhui Gao 1 , Shudong Jiang 1 , Yong Wang 1
Affiliation  

Porcine circovirus 4 (PCV4) is a novel circovirus first discovered in China in April 2019. Here, we established an SYBR Green I-based real-time PCR for quantitative detection of PCV4. A pair of specific primers was designed based on the conserved region of Cap of PCV4. The standard curve of the established real-time PCR

assay showed a good linear relationship. The sensitivity of the established real-time PCR was 100 times greater than that of conventional PCR, and the detection limit of the assay was 3 × 101 copies. There was no cross-reactivity with other swine DNA viruses, showing good specificity. The intra-group variation coefficient was 0.37–0.78%, and the inter-group variation coefficient was 0.57–0.94%, indicating that the assay has good repeatability. Moreover, the analysis of clinical samples showed that the positive detection rate of PCV4 was 10.71% (18/168), while that of conventional PCR was 8.93% (15/168). Interestingly, co-infection with PCV2 or PCV3, or both PCV2 and PCV3, was also detected. In conclusion, the established SYBR Green I-based real-time PCR may be a cost-effective and rapid method for PCV4 clinical diagnosis.



中文翻译:

建立基于SYBR Green的实时PCR检测猪圆环病毒4型的检测方法。

猪圆环病毒4(PCV4)是2019年4月在中​​国首次发现的新型圆环病毒。在这里,我们建立了基于SYBR Green I的实时PCR定量检测PCV4。基于PCV4的Cap的保守区域设计了一对特异性引物。建立的实时PCR的标准曲线

测定显示出良好的线性关系。建立的实时荧光定量PCR的灵敏度是常规PCR的100倍,检测限为3×10 1副本。与其他猪DNA病毒没有交叉反应,显示出良好的特异性。组内变异系数为0.37–0.78%,组间变异系数为0.57–0.94%,表明该测定具有良好的重复性。此外,对临床样本的分析表明,PCV4的阳性检出率为10.71%(18/168),而常规PCR的检出率为8.93%(15/168)。有趣的是,还检测到与PCV2或PCV3或PCV2和PCV3的共同感染。总之,建立的基于SYBR Green I的实时PCR可能是PCV4临床诊断的一种经济高效的快速方法。

更新日期:2020-08-31
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