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RabbitMash: Accelerating hash-based genome analysis on modern multi-core architectures.
Bioinformatics ( IF 5.8 ) Pub Date : 2020-08-26 , DOI: 10.1093/bioinformatics/btaa754
Zekun Yin 1, 2 , Xiaoming Xu 1 , Jinxiao Zhang 1 , Yanjie Wei 3 , Bertil Schmidt 4 , Weiguo Liu 1
Affiliation  

Mash is a popular hash-based genome analysis toolkit with applications to important downstream analyses tasks such as clustering and assembly. However, Mash is currently not able to fully exploit the capabilities of modern multi-core architectures, which in turn leads to high runtimes for large-scale genomic datasets.

中文翻译:

RabbitMash:在现代多核体系结构上加速基于散列的基因组分析。

Mash是一种流行的基于哈希的基因组分析工具包,可用于重要的下游分析任务,例如聚类和组装。但是,Mash当前无法充分利用现代多核体系结构的功能,从而导致大规模基因组数据集的高运行时间。
更新日期:2020-08-27
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