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Development of a single nucleotide polymorphism-based DNA marker for fall armyworm (Lepidoptera: Noctuidae) biotyping: a case study from the fall armyworm outbreak in Sri Lanka
The Canadian Entomologist ( IF 0.9 ) Pub Date : 2020-08-27 , DOI: 10.4039/tce.2020.52
Dhanesha Nanayakkara , Dimanthi Jayatilake , Suranga Kodithuwakku

Crop damage caused by fall armyworm (FAW), Spodoptera frugipera J.E. Smith (1797) (Lepidoptera: Noctuidae), has generated concern among agriculturists globally. In 2019, FAW was first reported in Sri Lanka, where it caused significant losses to corn crops. However, given that the two FAW biotypes – “rice strain” (R-FAW) and “corn strain” (C-FAW) – are morphologically identical, the biotype(s) present in Sri Lanka were unknown. The current study used the mitochondrial cytochrome c oxidase subunit I gene (mt-CO1) of FAW to biotype nine FAW samples collected in Sri Lanka. The resulting molecular phylogeny revealed that both R-FAW and C-FAW biotypes were present among the samples. In addition, we used the temperature-switch polymerase chain reaction (PCR) technique to develop a gel-based molecular marker. Two fragments were successfully amplified by the newly developed marker ABUOP0002, with fragment sizes of 341 bp from R-FAW and 204 bp from C-FAW. This demonstrates that ABUOP0002 can serve as a diagnostic gel-based molecular marker to identify the R-FAW and C-FAW biotypes from samples already identified to species level as S. frugiperda through taxonomical keys and provides a possible alternative to more expensive sequencing-based assays.



中文翻译:

秋季粘虫(鳞翅目:夜蛾科)生物分型的基于单核苷酸多态性的DNA标记的开发:斯里兰卡秋季粘虫爆发的案例研究

秋天的粘虫(FAW),草地贪夜蛾(Spodoptera frugipera JE Smith,1797年)(鳞翅目:夜蛾科)对作物的损害已引起全球农业学家的关注。2019年,一汽首次在斯里兰卡报道,这给玉米作物造成了重大损失。但是,鉴于两种一汽生物型-“稻株”(R-FAW)和“玉米株”(C-FAW)在形态上是相同的,因此在斯里兰卡存在的生物型是未知的。当前的研究使用了线粒体细胞色素C氧化酶亚基I基因(mt- CO1一汽)将斯里兰卡收集的九种一汽样品生物型化。所得的分子系统发育学表明,样品中同时存在R-FAW和C-FAW生物型。此外,我们使用了温度开关聚合酶链反应(PCR)技术来开发基于凝胶的分子标记。新开发的标记ABUOP0002成功扩增了两个片段,R-FAW的片段大小为341 bp,C-FAW的片段大小为204 bp。这表明ABUOP0002可以用作基于凝胶的诊断性分子标记,以通过分类键从已经鉴定到物种水平为S. frugiperda的样品中鉴定R-FAW和C-FAW生物型,并为更昂贵的基于测序的方法提供了可能的替代方法分析。

更新日期:2020-08-27
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