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International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium.
npj Digital Medicine ( IF 12.4 ) Pub Date : 2020-08-19 , DOI: 10.1038/s41746-020-00308-0
Gabriel A Brat 1 , Griffin M Weber 1 , Nils Gehlenborg 1 , Paul Avillach 1 , Nathan P Palmer 1 , Luca Chiovato 2, 3 , James Cimino 4 , Lemuel R Waitman 5 , Gilbert S Omenn 6 , Alberto Malovini 2 , Jason H Moore 7, 8 , Brett K Beaulieu-Jones 1 , Valentina Tibollo 2 , Shawn N Murphy 9 , Sehi L' Yi 1 , Mark S Keller 1 , Riccardo Bellazzi 2, 10 , David A Hanauer 11 , Arnaud Serret-Larmande 1 , Alba Gutierrez-Sacristan 1 , John J Holmes 7, 11 , Douglas S Bell 12 , Kenneth D Mandl 13 , Robert W Follett 12 , Jeffrey G Klann 14 , Douglas A Murad 12 , Luigia Scudeller 15 , Mauro Bucalo 16 , Katie Kirchoff 17 , Jean Craig 17 , Jihad Obeid 17 , Vianney Jouhet 18 , Romain Griffier 18 , Sebastien Cossin 18 , Bertrand Moal 18 , Lav P Patel 5 , Antonio Bellasi 19 , Hans U Prokosch 20 , Detlef Kraska 21 , Piotr Sliz 13 , Amelia L M Tan 1 , Kee Yuan Ngiam 22 , Alberto Zambelli 23 , Danielle L Mowery 7, 11 , Emily Schiver 24 , Batsal Devkota 25 , Robert L Bradford 26 , Mohamad Daniar 13 , Christel Daniel 27 , Vincent Benoit 27 , Romain Bey 27 , Nicolas Paris 27 , Patricia Serre 27 , Nina Orlova 27 , Julien Dubiel 27 , Martin Hilka 27 , Anne Sophie Jannot 28 , Stephane Breant 27 , Judith Leblanc 29 , Nicolas Griffon 27 , Anita Burgun 28 , Melodie Bernaux 30 , Arnaud Sandrin 27 , Elisa Salamanca 27 , Sylvie Cormont 27 , Thomas Ganslandt 31 , Tobias Gradinger 31 , Julien Champ 32 , Martin Boeker 33 , Patricia Martel 34 , Loic Esteve 35 , Alexandre Gramfort 36 , Olivier Grisel 36 , Damien Leprovost 37 , Thomas Moreau 36 , Gael Varoquaux 36 , Jill-Jênn Vie 38 , Demian Wassermann 36 , Arthur Mensch 39 , Charlotte Caucheteux 36 , Christian Haverkamp 40 , Guillaume Lemaitre 36 , Silvano Bosari 41 , Ian D Krantz 25 , Andrew South 42 , Tianxi Cai 1 , Isaac S Kohane 1
Affiliation  

We leveraged the largely untapped resource of electronic health record data to address critical clinical and epidemiological questions about Coronavirus Disease 2019 (COVID-19). To do this, we formed an international consortium (4CE) of 96 hospitals across five countries (www.covidclinical.net). Contributors utilized the Informatics for Integrating Biology and the Bedside (i2b2) or Observational Medical Outcomes Partnership (OMOP) platforms to map to a common data model. The group focused on temporal changes in key laboratory test values. Harmonized data were analyzed locally and converted to a shared aggregate form for rapid analysis and visualization of regional differences and global commonalities. Data covered 27,584 COVID-19 cases with 187,802 laboratory tests. Case counts and laboratory trajectories were concordant with existing literature. Laboratory tests at the time of diagnosis showed hospital-level differences equivalent to country-level variation across the consortium partners. Despite the limitations of decentralized data generation, we established a framework to capture the trajectory of COVID-19 disease in patients and their response to interventions.



中文翻译:

国际电子健康记录衍生的 COVID-19 临床病程概况:4CE 联盟。

我们利用大量未开发的电子健康记录数据资源来解决有关 2019 年冠状病毒病 (COVID-19) 的关键临床和流行病学问题。为此,我们成立了一个由五个国家的 96 家医院组成的国际联盟 (4CE) (www.covidclinical.net)。贡献者利用整合生物学和床边信息学 (i2b2) 或观察性医疗结果合作伙伴 (OMOP) 平台来映射到通用数据模型。该小组重点关注关键实验室测试值的时间变化。统一数据在本地进行分析,并转换为共享的聚合形式,以便快速分析和可视化区域差异和全球共性。数据涵盖 27,584 例 COVID-19 病例和 187,802 项实验室检测。病例数和实验室轨迹与现有文献一致。诊断时的实验室测试显示,医院层面的差异相当于联盟合作伙伴国家层面的差异。尽管分散式数据生成存在局限性,但我们建立了一个框架来捕获患者的 COVID-19 疾病轨迹及其对干预措施的反应。

更新日期:2020-08-19
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