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A study on the differentiation of filamentous cyanobacterial isolates using DNA fingerprinting approach
Indian Journal of Biochemistry and Biophysics ( IF 1.5 ) Pub Date : 2020-08-17
Yogesh Negi, Sunil Sharma, Ninni Sutradhar, Samrat Adhikari

The present study investigates the implication of DNA fingerprinting in discrimination of class isolates collected from a spread of habitats in south west Khasi Hills district of Meghalaya, India. Five totally different primers i.e., M13, enterbacterial repetitive intergenic consensus (ERIC), short tandem repetitive repeats (STRRs) 1A & B and long tandem repetitive repeats (LTRRs), derived from repetitive sequences gift within the ordering of true bacteria, were utilized. The generated knowledge was then evaluated for fingerprinting exploitation procedure and unweighted pairgroup method of arithmetic average (UPGMA) based dendrograms. Clear and variable stripe patterns were obtained for every of the targeted genomic regions used, LTRR being the sole exception. The stripe patterns delineate the existence of 2 basic distinct populations of true bacteria among the 19 isolates. The UPGMA cluster analyses in addition, disclosed the presence of numerous lineages among the isolates. On examination the resolution capability of the four genomic regions studied, it had been seen that, with the exception of LTRR, all the opposite regions hold smart resolution and therefore the ability to differentiate between numerous class populations. The results of the current study indicate the incidence of genetic variants among the 19 morphologically identical isolates of filiform cyanobacteria. Additionally, the study additionally explicates the quality of DNA fingerprinting supplemented with UPGMA cluster analysis as a speedy, economical and value effective tool for differentiating among morphologically identical populations.

中文翻译:

DNA指纹图谱鉴别丝状蓝细菌的研究

本研究调查了DNA指纹图谱对区分从印度梅加拉亚邦西南卡西山地区生境分布中收集的类分离株的影响。使用了五种完全不同的引物,即M13,肠细菌重复基因间共有序列(ERIC),短串联重复序列重复序列(STRR)1A和B和长串联重复序列重复序列(LTRR),它们是根据真实细菌的顺序从重复序列中获得的。然后,对生成的知识进行指纹开发程序和基于算术平均值(UPGMA)的非加权成对分组方法的树状图评估。对于所使用的每个目标基因组区域,均获得了清晰且可变的条带模式,LTRR是唯一的例外。条纹图案描绘了19个分离株中2个基本的真实细菌种群的存在。UPGMA聚类分析此外还揭示了分离株之间存在众多谱系。通过检查研究的四个基因组区域的分辨能力,可以发现,除了LTRR以外,所有相反的区域都具有智能分辨能力,因此可以区分众多类别种群。目前的研究结果表明,在19种形态相同的丝状蓝细菌分离株中,遗传变异的发生率很高。此外,该研究还阐述了DNA指纹图谱的质量,并补充了UPGMA聚类分析,可快速,
更新日期:2020-08-17
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