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Identification of key pathways and differentially expressed genes in bronchopulmonary dysplasia using bioinformatics analysis
Biotechnology Letters ( IF 2.0 ) Pub Date : 2020-08-14 , DOI: 10.1007/s10529-020-02986-y
Weiheng Yan 1, 2 , Miaomiao Jiang 1, 2 , Jun Zheng 1, 2
Affiliation  

The objective of this study was to discover unknown differentially expressed genes (DEGs) associated with bronchopulmonary dysplasia (BPD), analyze their functions and enriched signaling pathways, and identify hub genes correlating with BPD incidence and evolvement. Of 1289 DEGs identified, 568 were downregulated and 721 were upregulated. The DEGs were mainly associated with oxidative stress, angiogenesis, extracellular matrix, inflammation, cell cycle, and protein binding. Eight DEGs were identified as hub genes, including C-X-C motif chemokine ligand 5 (Cxcl5), connective tissue growth factor (Ctgf), interleukin 6 (IL6), matrix metallopeptidase 9 (Mmp9), mitogen-activated protein kinase 14 (Mapk14), platelet and endothelial cell adhesion molecule 1 (Pecam1), TIMP metallopeptidase inhibitor 1 (Timp1), and TIMP metallopeptidase inhibitor 2 (Timp2). IL6 mRNA and protein expression levels were significantly increased in the peripheral blood of neonates with BPD. Hence, BPD involves complex biological changes. Our findings indicate that inflammation and angiogenesis may play major roles in BPD pathogenesis and that IL6 has the potential to serve as a biomarker for early BPD diagnosis.

中文翻译:

使用生物信息学分析鉴定支气管肺发育不良的关键通路和差异表达基因

本研究的目的是发现与支气管肺发育不良 (BPD) 相关的未知差异表达基因 (DEG),分析其功能和丰富的信号通路,并确定与 BPD 发病率和进化相关的枢纽基因。在鉴定的 1289 个 DEG 中,568 个被下调,721 个被上调。DEGs 主要与氧化应激、血管生成、细胞外基质、炎症、细胞周期和蛋白质结合有关。8 个 DEG 被鉴定为枢纽基因,包括 CXC 基序趋化因子配体 5 (Cxcl5)、结缔组织生长因子 (Ctgf)、白细胞介素 6 (IL6)、基质金属肽酶 9 (Mmp9)、丝裂原活化蛋白激酶 14 (Mapk14)、血小板和内皮细胞粘附分子 1 (Pecam1)、TIMP 金属肽酶抑制剂 1 (Timp1) 和 TIMP 金属肽酶抑制剂 2 (Timp2)。BPD新生儿外周血IL6 mRNA和蛋白表达水平显着升高。因此,BPD 涉及复杂的生物学变化。我们的研究结果表明炎症和血管生成可能在 BPD 发病机制中起主要作用,并且 IL6 有可能作为早期 BPD 诊断的生物标志物。
更新日期:2020-08-14
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