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Comparative COX I Molecular Docking of Phyto-chemicals (Flavonoids, Alkaloids, Lignans and Terpenoids) for Anti-platelet Aggregation Dynamics
Current Computer-Aided Drug Design ( IF 1.5 ) Pub Date : 2021-06-30 , DOI: 10.2174/1573409916666200630110711
Acharya Balkrishna 1 , Subarna Pokhrel 1 , Anurag Varshney 1
Affiliation  

Introduction: Cycloxygenase I (COX I) plays an important role in the pathogenesis of atherothrombosis. Therefore, there is a need of anti-platelet aggregation drugs that decrease thrombus formation.

Methods: Molecular docking of the phytochemicals (flavonoids, alkaloids, terpenoids and lignans) was carried out. Binding energies and the ligand efficiencies of the phytochemicals were compared by standard statistical tool.

Results: Docking showed that their inhibitory activity towards COX I mainly depends on hydrogen bonds between the hydroxyl groups of the polyphenol ligands and the binding sites, π-cation/anion, π-sigma bond, π-alkyl, and π-π T shaped interactions that stabilize the ligand within the active site. Alkaloids are superior over the others to develop as optimal inhibitor compounds of human COX I in terms of ligand efficiency.

Conclusion: Ligand efficiencies fall within the criteria of orally efficacious drugs, and could pave a way for lead anti-platelet drug discovery and subsequent development.



中文翻译:

用于抗血小板聚集动力学的植物化学物质(黄酮类、生物碱、木脂素和萜类化合物)的比较 COX I 分子对接

引言:环氧合酶 I (COX I) 在动脉粥样硬化血栓形成的发病机制中起重要作用。因此,需要减少血栓形成的抗血小板聚集药物。

方法:对植物化学物质(黄酮类、生物碱、萜类和木脂素)进行分子对接。通过标准统计工具比较植物化学物质的结合能和配体效率。

结果:对接表明它们对COX I的抑制活性主要取决于多酚配体的羟基与结合位点之间的氢键、π-阳离子/阴离子、π-σ键、π-烷基和π-πT形键。在活性位点内稳定配体的相互作用。在配体效率方面,生物碱优于其他生物碱,可开发为人类 COX I 的最佳抑制剂化合物。

结论:配体效率符合口服有效药物的标准,可为先导抗血小板药物的发现和后续开发铺平道路。

更新日期:2021-06-30
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