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Genomic data imputation with variational auto-encoders.
GigaScience ( IF 11.8 ) Pub Date : 2020-08-06 , DOI: 10.1093/gigascience/giaa082
Yeping Lina Qiu 1, 2 , Hong Zheng 1 , Olivier Gevaert 1, 3
Affiliation  

As missing values are frequently present in genomic data, practical methods to handle missing data are necessary for downstream analyses that require complete data sets. State-of-the-art imputation techniques, including methods based on singular value decomposition and K-nearest neighbors, can be computationally expensive for large data sets and it is difficult to modify these algorithms to handle certain cases not missing at random.

中文翻译:

使用变分自动编码器进行基因组数据插补。

由于基因组数据中经常存在缺失值,因此对于需要完整数据集的下游分析来说,处理缺失数据的实用方法是必要的。最先进的插补技术,包括基于奇异值分解和 K 最近邻的方法,对于大型数据集来说计算成本可能很高,并且很难修改这些算法来处理某些非随机丢失的情况。
更新日期:2020-08-06
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