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Complete genome sequence of “Thiodictyon syntrophicum” sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno
Environmental Microbiome ( IF 6.2 ) Pub Date : 2018-05-09 , DOI: 10.1186/s40793-018-0317-z
Samuel M. Luedin , Joël F. Pothier , Francesco Danza , Nicola Storelli , Niels-Ulrik Frigaard , Matthias Wittwer , Mauro Tonolla

“Thiodictyon syntrophicum” sp. nov. strain Cad16T is a photoautotrophic purple sulfur bacterium belonging to the family of Chromatiaceae in the class of Gammaproteobacteria. The type strain Cad16T was isolated from the chemocline of the alpine meromictic Lake Cadagno in Switzerland. Strain Cad16T represents a key species within this sulfur-driven bacterial ecosystem with respect to carbon fixation. The 7.74-Mbp genome of strain Cad16T has been sequenced and annotated. It encodes 6237 predicted protein sequences and 59 RNA sequences. Phylogenetic comparison based on 16S rRNA revealed that Thiodictyon elegans strain DSM 232T the most closely related species. Genes involved in sulfur oxidation, central carbon metabolism and transmembrane transport were found. Noteworthy, clusters of genes encoding the photosynthetic machinery and pigment biosynthesis are found on the 0.48 Mb plasmid pTs485. We provide a detailed insight into the Cad16T genome and analyze it in the context of the microbial ecosystem of Lake Cadagno.

中文翻译:

Siodictyon syntrophicum ” sp的完整基因组序列。十一月 Cad16 T菌株,一种自养光的紫色硫细菌,从高山淡色的Cadagno湖中分离出来。

“ Siodictyon syntrophicum” sp。十一月 Cad16T菌株是一种光自养型紫色硫细菌,属于丙型杆菌细菌科的科。Cad16T型菌株是从瑞士阿尔卑斯山的卡达格诺湖的化学趋化因子中分离出来的。就碳固定而言,Cad16T菌株代表了该硫驱动细菌生态系统中的关键物种。已对Cad16T菌株的7.74-Mbp基因组进行了测序和注释。它编码6237个预测的蛋白质序列和59个RNA序列。基于16S rRNA的系统发育比较表明,秀丽隐杆线虫菌株DSM 232T最密切相关。发现了涉及硫氧化,中央碳代谢和跨膜转运的基因。值得注意的是 在0.48 Mb质粒pTs485上发现了编码光合作用和色素生物合成的基因簇。我们提供了Cad16T基因组的详细见解,并在卡达尼奥湖微生物生态系统的背景下对其进行了分析。
更新日期:2018-05-09
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