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A cell type annotation Jamboree-Revival of а communal science forum.
genesis ( IF 2.4 ) Pub Date : 2020-06-25 , DOI: 10.1002/dvg.23383
Leonid Peshkin 1 , Marc W Kirschner 1
Affiliation  

Cell Atlases are currently being constructed for human tissues as well as several model organisms. New technologies make creation of vast datasets in many species possible, but the value of such data crucially depends on the quality of annotation. The tools of annotating single cell data and creating knowledge representations comparable across organisms have been lagging. We argue that successfully creating Cell Atlases will require a revival of a boot‐camp style forum for communal annotation combined with an intensive learning workshop, dubbed a “Jamboree”. We report on our experience of successfully developing a structure and curriculum and running such a Jamboree for Xenopus Embryonic Cell Types at the Janelia Farms campus of the Howard Hughes Medical Institute.

中文翻译:

社区科学论坛的细胞类型注释 Jamboree-Revival。

目前正在为人体组织以及几种模式生物构建细胞图谱。新技术使在许多物种中创建大量数据集成为可能,但此类数据的价值关键取决于注释的质量。注释单细胞数据和创建跨生物体可比较的知识表示的工具一直滞后。我们认为,成功创建 Cell Atlas 将需要复兴用于公共注释的新兵训练营风格论坛,并结合称为“Jamboree”的强化学习研讨会。我们报告了我们在霍华德休斯医学研究所 Janelia Farms 校园成功开发结构和课程以及为非洲爪蟾胚胎细胞类型运行此类 Jamboree 的经验。
更新日期:2020-06-25
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