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SHiNeMaS: a web tool dedicated to seed lots history, phenotyping and cultural practices.
Plant Methods ( IF 4.7 ) Pub Date : 2020-07-23 , DOI: 10.1186/s13007-020-00640-2
Yannick De Oliveira 1 , Laura Burlot 1, 2 , Julie C Dawson 3 , Isabelle Goldringer 1 , Darkawi Madi 1 , Pierre Rivière 4 , Delphine Steinbach 1 , Gaëlle van Frank 1 , Mathieu Thomas 5, 6
Affiliation  

In 2005, researchers from the French National Research Institute for Agriculture, Food and Environment (Institut national de recherche pour l’agriculture, l’alimentation et l’environnement, INRAE) started a collaboration with the French farmers’ seed network Réseau Semences Paysannes (RSP) on bread wheat participatory breeding (PPB). The aims were: (1) to study on-farm management of crop diversity, (2) to develop population-varieties adapted to organic and low-inputs agriculture, (3) to co-develop tools and methods adapted to on-farm experiments. In this project, researchers and farmers’ organizations needed to map the history and life cycle of the population-varieties using network formalism to represent relationships between seed lots. All this information had to be centralized and stored in a database. We describe here SHiNeMaS (Seeds History and Network Management System) a web tool database. SHiNeMaS aims to provide useful interfaces to track seed lot history and related data (phenotyping, environment, cultural practices). Although SHiNeMaS has been developed in the context of a bread wheat participatory breeding program, the database has been designed to manage any kind and even multiple cultivated plant species. SHiNeMaS is available under Affero GPL licence and uses free technologies such as the Python language, Django framework or PostgreSQL database management system (DBMS). We developed SHiNeMaS, a web tool database, dedicated to the management of the history of seed lots and related data like phenotyping, environmental information and cultural practices. SHiNeMaS has been used in production in our laboratory for 5 years and farmers’ organizations facilitators manage their own information in the system.

中文翻译:

SHiNeMaS:一个致力于种子批次历史、表型分析和文化实践的网络工具。

2005 年,来自法国国家农业、食品与环境研究所(Institut national de recherche pour l'agriculture, l'alimentation et l'environnement, INRAE)的研究人员开始与法国农民种子网络 Réseau Semences Paysannes( RSP) 关于面包小麦参与式育种 (PPB)。目的是:(1)研究作物多样性的农场管理,(2)开发适应有机和低投入农业的种群品种,(3)共同开发适应农场实验的工具和方法. 在这个项目中,研究人员和农民组织需要使用网络形式来绘制种群品种的历史和生命周期,以表示种子批次之间的关系。所有这些信息都必须集中并存储在数据库中。我们在这里描述了 SHiNeMaS(种子历史和网络管理系统)一个网络工具数据库。SHiNeMaS 旨在提供有用的界面来跟踪种子批次历史和相关数据(表型、环境、文化实践)。尽管 SHiNeMaS 是在面包小麦参与性育种计划的背景下开发的,但该数据库旨在管理任何种类甚至多种栽培植物物种。SHiNeMaS 在 Affero GPL 许可下可用,并使用 Python 语言、Django 框架或 PostgreSQL 数据库管理系统 (DBMS) 等免费技术。我们开发了 SHiNeMaS,一个网络工具数据库,专门用于管理种子批次的历史和相关数据,如表型、环境信息和文化实践。
更新日期:2020-07-23
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