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Transcriptome-wide association study for restless legs syndrome identifies new susceptibility genes.
Communications Biology ( IF 5.2 ) Pub Date : 2020-07-10 , DOI: 10.1038/s42003-020-1105-z
Fulya Akçimen 1, 2 , Faezeh Sarayloo 1, 2 , Calwing Liao 1, 2 , Jay P Ross 1, 2 , Rachel De Barros Oliveira 2 , Patrick A Dion 2, 3 , Guy A Rouleau 1, 2, 3
Affiliation  

Restless legs syndrome (RLS) is a common neurological condition, with a prevalence of 5–15% in Central Europe and North America. Although genome-wide association studies (GWAS) have identified some common risk regions for RLS, the causal genes have yet to be fully elucidated. We conducted a transcriptome-wide association study involving 15,126 RLS cases and 95,725 controls, from the most recent meta-analysis of GWAS, and gene expression weights of GTEx v7 and the CMC dorsolateral prefrontal cortex tissue panels. We identified 13 associations (in 8 independent loci) at the transcriptome-wide significant level, of which 6 were not implicated in the previous GWAS: SKAP1, SLC36A1, CCDC57, FN3KRP, NCOA6/TRPC4AP. A fine-mapping approach prioritized CMTR1, RP1-153P14.5, PRPF6, and PPP3R1 – to our knowledge, the latter of which is the first RLS-associated gene directly implicated in dopaminergic pathways. Overall, our findings highlight the power of integrating gene expression data with GWAS to prioritize putative causal genes for functional follow-up studies.



中文翻译:

跨转录组的不安腿综合征相关研究确定了新的易感基因。

不安腿综合征(RLS)是一种常见的神经系统疾病,在中欧和北美的患病率为5-15%。尽管全基因组关联研究(GWAS)已经确定了RLS的一些常见风险区域,但致病基因尚未得到充分阐明。我们从GWAS的最新荟萃分析中,对15,126例RLS病例和95,725例对照进行了转录组范围的关联研究,以及GTEx v7和CMC背外侧前额叶皮层组织组的基因表达权重。我们在转录组范围内的显着水平上鉴定出13个关联(在8个独立基因座中),其中6个与先前的GWAS不相关:SKAP1SLC36A1CCDC57FN3KRPNCOA6 /TRPC4AP。精细映射方法优先考虑CMTR1RP1-153P14.5PRPF6PPP3R1,据我们所知,后者是第一个直接与多巴胺能途径有关的RLS相关基因。总体而言,我们的研究结果突出了将基因表达数据与GWAS集成在一起的功能,以便为功能性后续研究确定可能的致病基因。

更新日期:2020-07-10
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