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Metadynamics of Paths.
Physical Review Letters ( IF 8.1 ) Pub Date : 2020-07-09 , DOI: 10.1103/physrevlett.125.026001
Davide Mandelli 1 , Barak Hirshberg 2, 3 , Michele Parrinello 1, 2, 3
Affiliation  

We present a method to sample reactive pathways via biased molecular dynamics simulations in trajectory space. We show that the use of enhanced sampling techniques enables unconstrained exploration of multiple reaction routes. Time correlation functions are conveniently computed via reweighted averages along a single trajectory and kinetic rates are accessed at no additional cost. These abilities are illustrated analyzing a model potential and the umbrella inversion of NH3 in water. The algorithm allows a parallel implementation and promises to be a powerful tool for the study of rare events.

中文翻译:

路径的元动力学。

我们提出了一种通过轨迹空间中的有偏分子动力学模拟来采样反应途径的方法。我们表明,使用增强的采样技术可以无限制地探索多个反应路线。时间相关函数可通过沿单个轨迹的加权平均值方便地进行计算,并且无需额外费用即可获得动力学速率。通过分析模型的潜力和伞的反演来说明这些能力。NH3在水里。该算法允许并行执行,并有望成为研究稀有事件的有力工具。
更新日期:2020-07-09
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