Complete genome sequence of a marine-derived bacterium Pseudomonas sp. SXM-1 and characterization of its siderophore through antiSMASH analysis and with mass spectroscopic method,Marine Genomics

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Complete genome sequence of a marine-derived bacterium Pseudomonas sp. SXM-1 and characterization of its siderophore through antiSMASH analysis and with mass spectroscopic method
Marine Genomics ( IF 1.3 ) Pub Date : 2020-06-30 , DOI: 10.1016/j.margen.2020.100802
Wenbin Guo ₁ , Fang Li ₁ , Jinmei Xia ₁ , Weiyi Wang ₁

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Pseudomonas sp. SXM-1, isolated from coastal sea water of Xiamen Bay, could produce extracellular pyoverdine. Here, we present the complete genome of Pseudomonas sp. SXM-1, which will facilitate the genome mining of the pyoverdine synthetase coding gene cluster. The sequenced genome, a circular chromosome, is 7,226,716 bp in length, which contains 60.78% of GC bases, 6549 proteins, 67 tRNAs, and 16 rRNA encoding genes. The structure of pyoverdine produced by Pseudomonas sp. SXM-1 was predicted by using the antiSMASH 5.1.2 tool and further characterized with mass spectroscopic method.

中文翻译：

海洋来源细菌假单胞菌的完整基因组序列。SXM-1及其铁载体通过antiSMASH分析和质谱法表征

假单胞菌属从厦门湾近海海水中分离得到的SXM-1可以产生胞外pyoverdine。在这里，我们展示了假单胞菌属的完整基因组。SXM-1，这将促进pyoverdine 合成酶编码基因簇的基因组挖掘。测序的基因组为环状染色体，长度为 7,226,716 bp，其中包含 60.78% 的 GC 碱基、6549 个蛋白质、67 个 tRNA 和 16 个 rRNA 编码基因。pyoverdine的结构产生的由假单胞菌属。SXM-1 是通过使用 antiSMASH 5.1.2 工具预测的，并用质谱方法进一步表征。

更新日期：2020-06-30

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