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4'-C-Aminomethyl-2'-deoxy-2'-fluoroarabinonucleoside increases the nuclease resistance of DNA without inhibiting the ability of a DNA/RNA duplex to activate RNase H.
Bioorganic & Medicinal Chemistry ( IF 3.3 ) Pub Date : 2020-06-30 , DOI: 10.1016/j.bmc.2020.115611
Tatsuya Tsuchihira 1 , Ryohei Kajino 1 , Yusuke Maeda 1 , Yoshihito Ueno 2
Affiliation  

An antisense oligonucleotide is expected as an innovative drug for cancer and hereditary diseases. In this paper, we designed and synthesized DNAs containing a novel nucleoside analog, 1-(4-C-aminomethyl-2-deoxy-2-fluoro-β-d-arabinofuranosyl)thymine, and evaluated their properties. It was revealed that the analog slightly decreases the thermal stability of the DNA/RNA duplex but significantly increases the stability of DNA in a buffer containing bovine serum. Furthermore, it turned out that the DNA/RNA duplex containing the analog is a good substrate for Escherichia coli RNase H. Thus, DNAs containing the nucleoside analog would be good candidates for the development of therapeutic antisense oligonucleotides.



中文翻译:

4'-C-氨基甲基-2'-脱氧-2'-氟阿拉伯糖核苷可增加DNA的核酸酶抗性,而不会抑制DNA / RNA双链体激活RNase H的能力。

预计反义寡核苷酸将成为治疗癌症和遗传性疾病的创新药物。在本文中,我们设计并合成了包含新型核苷类似物1-(4 - C-氨基甲基-2-脱氧-2-氟-β- d-阿拉伯呋喃糖基)胸腺嘧啶的DNA ,并评估了它们的特性。揭示了类似物稍微降低了DNA / RNA双链体的热稳定性,但是显着提高了在含有牛血清的缓冲液中DNA的稳定性。此外,事实证明,包含类似物的DNA / RNA双链体是大肠杆菌RNase H的良好底物。因此,包含核苷类似物的DNA将是开发治疗性反义寡核苷酸的良好候选者。

更新日期:2020-07-09
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