当前位置: X-MOL 学术Eur. J. Plant Pathol. › 论文详情
Our official English website, www.x-mol.net, welcomes your feedback! (Note: you will need to create a separate account there.)
Comparison of the performance of the main real-time and conventional PCR detection tests for ‘ Candidatus Liberibacter’ spp., plant pathogenic bacteria causing the Huanglongbing disease in Citrus spp.
European Journal of Plant Pathology ( IF 1.8 ) Pub Date : 2020-06-30 , DOI: 10.1007/s10658-020-02052-3
Gilles Cellier , Cristina Redondo , Jaime Cubero , Montserrat Roselló , Eugénia de Andrade , Leonor Cruz , Elen Ince , H. Nilüfer Yildiz , Pakize Gök Güler , Anna Maria D’Onghia , Thaer Yaseen , Khaled Djelouah , Eveline Metz-Verschure , Francesca Gaffuri , Richard A. Gottsberger , Baldissera Giovani

Huanglongbing disease affects the Rutaceae family and is associated with three phloem-limited bacterium species: Candidatus Liberibacter asiaticus, africanus and americanus. These species are considered quarantine pathogens in the world, and pose major risks for citrus production and industry.

Due to the low titer and the uneven distribution of the bacteria within its host plant, conventional PCR detection protocols can lead to false negative results, especially for early detection. Herein, three real-time PCR diagnostic methods recommended by the EPPO and FAO for asiaticus and africanus species detection were evaluated for their performance and compared with a conventional duplex PCR. Assessments were done as part of an international cooperative project under the EUPHRESCO guidance. Intra-laboratory assessment of the analytical specificity and analytical sensitivity was performed on 33 target or non-target DNA samples and seven target DNA samples were used to determine the sensitivity. Thereafter, repeatability, reproducibility, and concordance odds ratio were assessed on 20 target or non-target DNA samples through a collaborative test performance study organized among eight international laboratories. Results showed that the Li protocol proved to be the best method for asiaticus and africanus species detection, along with the conventional duplex PCR; whereas the Morgan protocol showed high performance only for asiaticus species. Interlaboratory reproducibility was high, suggesting that these real-time PCR methods can be readily transferred to diagnostic laboratories.



中文翻译:

主要实时和常规PCR检测测试法对'Candidatus Liberibacter'spp。(导致柑橘属黄龙病的植物致病细菌)的性能进行比较。

黄龙病影响芸香科,并有三个韧皮部限制细菌种类有关:暂定Liberibacter胭脂,非洲种和美洲。这些物种在世界范围内被视为隔离病原体,对柑橘的生产和工业构成重大风险。

由于其宿主植物中的滴度低且细菌分布不均,常规PCR检测方案可能导致假阴性结果,尤其是对于早期检测。在此,评估了EPPO和FAO推荐的三种实时PCR诊断方法对亚洲和非洲物种的检测性能,并与常规双工PCR进行了比较。评估是在EUPHRESCO指导下的国际合作项目的一部分。在实验室内对33个目标或非目标DNA样品进行了分析特异性和分析灵敏度的评估,并使用7个目标DNA样品确定了灵敏度。此后,重复性,再现性,通过在八个国际实验室之间组织的协作测试性能研究,对20个靶标或非靶标DNA样品进行了评估和一致性比值比。结果表明,与常规的双链PCR相比,Li方案被证明是检测积雪草和非洲种的最佳方法。而Morgan协议仅对积雪草物种显示出高性能。实验室间的可重复性很高,表明这些实时PCR方法可以很容易地转移到诊断实验室。

更新日期:2020-06-30
down
wechat
bug