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Proposal of Desulfosarcina ovata subsp. sediminis subsp. nov., a novel toluene-degrading sulfate-reducing bacterium isolated from tidal flat sediment of Tokyo Bay.
Systematic and Applied Microbiology ( IF 3.4 ) Pub Date : 2020-06-27 , DOI: 10.1016/j.syapm.2020.126109
Miho Watanabe 1 , Yuriko Higashioka 2 , Hisaya Kojima 3 , Manabu Fukui 3
Affiliation  

Strain 28bB2TT is a sulfate-reducing bacterium isolated in a previous study, obtained from a p-xylene-degrading enrichment culture. Physiological, phylogenetic and genomic characterizations of strain 28bB2TT were performed to establish the taxonomic status of the strain. Cells of strain 28bB2TT were short oval-shaped (0.8–1.2 × 1.2–2.7 μm), motile, and Gram-negative. For growth, the optimum pH was pH 6.5–7.0 and the optimum temperature was 28–32 °C. Strain 28bB2TT oxidized toluene but could not utilize p-xylene. Sulfate and thiosulfate were used as electron acceptors. The G + C content of the genomic DNA was 53.8 mol%. The genome consisted of an approximately 8.3 Mb of chromosome and two extrachromosomal elements. On the basis of 16S rRNA gene analysis, strain 28bB2TT was revealed to belong to the genus Desulfosarcina, with high sequence identities to Desulfosarcina ovata oXyS1T (99.5%) and Desulfosarcina cetonica DSM 7267T (98.7%). Results of Average Nucleotide Identity (ANI) calculation and digital DNA–DNA hybridization (dDDH) analysis showed that the strain 28bB2TT should be classified as a subspecies under D. ovata. Based on physiological and phylogenetic data, strain 28bB2TT (=NBRC 106234 =DSM 23484) is proposed as the type strain of a novel species in genus Desulfosarcina, Desulfosarcina ovata subsp. sediminis subsp. nov.



中文翻译:

卵形脱硫亚种的提议。塞迪米尼斯亚种 nov。,从东京湾的潮滩沉积物中分离出的新型降解甲苯的硫酸盐还原细菌。

菌株28bB2T T是在先前的研究中分离的硫酸盐还原细菌,得自二甲苯降解的浓缩培养物。进行了菌株28bB2T T的生理,系统发育和基因组鉴定,以建立菌株的分类学状态。菌株28bB2T T的细胞为短椭圆形(0.8–1.2×1.2–2.7μm),运动型和革兰氏阴性。为了生长,最适pH为pH 6.5-7.0,最适温度为28-32°C。菌株28bB2T T氧化甲苯但不能利用p-二甲苯。硫酸盐和硫代硫酸盐用作电子受体。基因组DNA的G + C含量为53.8mol%。该基因组由大约8.3 Mb的染色体和两个染色体外元件组成。在16S rRNA基因分析的基础上,发现菌株28bB2T T属于脱硫弧菌属,与卵形脱硫弧菌oXyS1 T(99.5%)和Cetonica DSM 7267 T(98.7%)具有高度的序列同一性。平均核苷酸同一性(ANI)计算结果和数字DNA-DNA杂交(dDDH)分析结果表明,应将28bB2T T菌株归类为卵形线虫的一个亚种。基于生理和系统发育数据,菌株28bB2T Ť(= NBRC 106234 = DSM 23484)被提出作为在属一个新种的模式菌株DesulfosarcinaDesulfosarcina卵形亚种。塞迪米尼斯亚种 十一月

更新日期:2020-06-27
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