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Development of multiplex oligonucleotide microarray for simultaneous detection of six swine pathogens.
Journal of Virological Methods ( IF 2.2 ) Pub Date : 2020-06-26 , DOI: 10.1016/j.jviromet.2020.113921
Yan Jiang 1 , Fuping Nie 2 , Shan Jiang 1 , Yingguo Li 3 , Yue Wu 4 , Jun Yang 3 , Yu Bao 3 , Yu Wang 3 , Guomin Wang 3 , Xianliang Li 3 , Meimei Shi 3 , Bin Zhou 4
Affiliation  

In order to establish a high-throughput identification technique that simultaneously detects six major pathogens including APP, HPS, PRRSV, Mhp, PCV-2 and CSFV, six pairs of primers and probes were designed based on the specific conservative sequences of the pathogens, a multiplex PCR system was developed, hybrid parameters were optimized, and evaluation of the technology was performed. The results showed that the present detection method had a sensitivity of 5.8 × 102copies/μL for APP, 7.8 × 103 copies/μL for HPS, 6.8 × 103 copies/μL for Mhp, 6.3 × 102 copies/μL for PCV-2, 4.8 × 103 copies/μL for PRRSV, and 5.5 × 102 copies/μL for CSFV, respectively; and it produced no cross reaction against the other nine pathogens like swine-origin pseudorabies virus, porcine parvovirus, Japanese B encephalitis virus, swine vesicular disease virus, vesicular stomatitis virus, foot-and-mouth disease virus, bluetongue virus, peste des petits ruminants virus and salmonella. Application of the multiplex oligonucleotide microarray established here to testing 285 clinical blood samples indicated a single infection rate of 18.2 % (52/285) and a mixed infection rate of 6.3 % (18/285) which were consistent with the results of the sequencing verification. This technique might serve as a rapid and high-throughput method of detection for epidemic investigation and clinical diagnosis of multiple pathogens.



中文翻译:

同时检测六种猪病原体的多重寡核苷酸微阵列的开发。

为了建立可同时检测APP,HPS,PRRSV,Mhp,PCV-2和CSFV等六种主要病原体的高通量鉴定技术,根据病原体的特定保守序列设计了六对引物和探针。开发了多重PCR系统,优化了杂交参数,并对技术进行了评估。结果表明,本检测方法对APP的灵敏度为5.8×10 2拷贝/μL,对HPS的灵敏度为7.8×10 3拷贝/μL,对Mhp的灵敏度为6.8×10 3拷贝/μL,对Mhp的灵敏度为6.3×10 2拷贝/μL PCV-2,PRRSV为4.8×10 3拷贝/μL,5.5×10 2CSFV的拷贝数/μL;它与其他九种病原体没有交叉反应,如猪源伪狂犬病病毒,猪细小病毒,日本乙型脑炎病毒,猪水泡病病毒,水泡性口炎病毒,口蹄疫病毒,蓝舌病病毒,小反刍动物病毒病毒和沙门氏菌。此处建立的多重寡核苷酸微阵列在检测285种临床血液样本中的应用表明,单次感染率为18.2%(52/285),混合感染率为6.3%(18/285),与测序验证的结果一致。该技术可作为多种病原体的流行病调查和临床诊断的快速,高通量检测方法。

更新日期:2020-08-29
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