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Targeting hub genes and pathways of innate immune response in COVID-19: A network biology perspective.
International Journal of Biological Macromolecules ( IF 7.7 ) Pub Date : 2020-06-26 , DOI: 10.1016/j.ijbiomac.2020.06.228
Kartikay Prasad 1 , Fatima Khatoon 1 , Summya Rashid 2 , Nemat Ali 3 , Abdullah F AlAsmari 3 , Mohammad Z Ahmed 4 , Ali S Alqahtani 4 , Mohammed S Alqahtani 5 , Vijay Kumar 1
Affiliation  

The current pandemic of 2019 novel coronavirus disease (COVID-19) caused by a novel virus strain, 2019-nCoV/SARS-CoV-2 have posed a serious threat to global public health and economy. It is largely unknown how the human immune system responds to this infection. A better understanding of the immune response to SARS-CoV-2 will be important to develop therapeutics against COVID-19. Here, we have used transcriptomic profile of human alveolar adenocarcinoma cells (A549) infected with SARS-CoV-2 and employed a network biology approach to generate human-virus interactome. Network topological analysis discovers 15 SARS-CoV-2 targets, which belongs to a subset of interferon (IFN) stimulated genes (ISGs). These ISGs (IFIT1, IFITM1, IRF7, ISG15, MX1, and OAS2) can be considered as potential candidates for drug targets in the treatments of COVID-19. We have identified significant interaction between ISGs and TLR3 agonists, like poly I: C, and imiquimod, and suggests that TLR3 agonists can be considered as a potential drug for drug repurposing in COVID-19. Our network centric analysis suggests that moderating the innate immune response is a valuable approach to target COVID-19.



中文翻译:

针对COVID-19中的中枢基因和先天性免疫应答的途径:网络生物学的观点。

当前由一种新型病毒株2019-nCoV / SARS-CoV-2引起的2019年新型冠状病毒疾病(COVID-19)大流行对全球公共卫生和经济构成了严重威胁。人体免疫系统如何应对这种感染在很大程度上是未知的。更好地理解对SARS-CoV-2的免疫反应对于开发针对COVID-19的疗法非常重要。在这里,我们使用了感染SARS-CoV-2的人肺泡腺癌细胞(A549)的转录组谱,并采用了网络生物学方法来生成人病毒相互作用组。网络拓扑分析发现了15个SARS-CoV-2靶标,该靶标属于干扰素(IFN)刺激基因(ISG)的子集。这些ISG(IFIT1,IFITM1,IRF7,ISG15,MX1和OAS2)可以被视为COVID-19治疗药物靶标的潜在候选者。我们已经确定ISG和TLR3激动剂(例如聚I:C和咪喹莫特)之间存在显着的相互作用,并建议TLR3激动剂可被视为COVID-19中潜在的药物重新用途。我们以网络为中心的分析表明,减轻先天免疫应答是靶向COVID-19的宝贵方法。

更新日期:2020-07-03
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