当前位置: X-MOL 学术Gigascience › 论文详情
Our official English website, www.x-mol.net, welcomes your feedback! (Note: you will need to create a separate account there.)
CandiMeth: Powerful yet simple visualization and quantification of DNA methylation at candidate genes.
GigaScience ( IF 11.8 ) Pub Date : 2020-06-22 , DOI: 10.1093/gigascience/giaa066
Sara-Jayne Thursby 1 , Darin K Lobo 1, 2 , Kristina Pentieva 3 , Shu-Dong Zhang 4 , Rachelle E Irwin 4 , Colum P Walsh 1
Affiliation  

DNA methylation microarrays are widely used in clinical epigenetics and are often processed using R packages such as ChAMP or RnBeads by trained bioinformaticians. However, looking at specific genes requires bespoke coding for which wet-lab biologists or clinicians are not trained. This leads to high demands on bioinformaticians, who may lack insight into the specific biological problem. To bridge this gap, we developed a tool for mapping and quantification of methylation differences at candidate genomic features of interest, without using coding.

中文翻译:

CandiMeth:强大而简单的候选基因 DNA 甲基化可视化和量化。

DNA 甲基化微阵列广泛用于临床表观遗传学,通常由训练有素的生物信息学家使用 R 包(例如 ChAMP 或 RnBeads)进行处理。然而,查看特定基因需要定制编码,而湿实验室生物学家或临床医生没有接受过培训。这导致对生物信息学家的高要求,他们可能缺乏对特定生物学问题的洞察力。为了弥补这一差距,我们开发了一种工具,用于绘制和量化感兴趣的候选基因组特征的甲基化差异,而不使用编码。
更新日期:2020-06-23
down
wechat
bug