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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.
Nucleic Acids Research ( IF 16.6 ) Pub Date : 2020-06-01 , DOI: 10.1093/nar/gkaa434
Vahid Jalili 1 , Enis Afgan 2 , Qiang Gu 1 , Dave Clements 2 , Daniel Blankenberg 3 , Jeremy Goecks 1 , James Taylor 2 , Anton Nekrutenko 4
Affiliation  

Galaxy (https://galaxyproject.org) is a web-based computational workbench used by tens of thousands of scientists across the world to analyze large biomedical datasets. Since 2005, the Galaxy project has fostered a global community focused on achieving accessible, reproducible, and collaborative research. Together, this community develops the Galaxy software framework, integrates analysis tools and visualizations into the framework, runs public servers that make Galaxy available via a web browser, performs and publishes analyses using Galaxy, leads bioinformatics workshops that introduce and use Galaxy, and develops interactive training materials for Galaxy. Over the last two years, all aspects of the Galaxy project have grown: code contributions, tools integrated, users, and training materials. Key advances in Galaxy's user interface include enhancements for analyzing large dataset collections as well as interactive tools for exploratory data analysis. Extensions to Galaxy's framework include support for federated identity and access management and increased ability to distribute analysis jobs to remote resources. New community resources include large public servers in Europe and Australia, an increasing number of regional and local Galaxy communities, and substantial growth in the Galaxy Training Network.

中文翻译:

用于可访问、可重复和协作的生物医学分析的 Galaxy 平台:2020 年更新。

Galaxy (https://galaxyproject.org) 是一个基于网络的计算工作台,全世界数以万计的科学家使用它来分析大型生物医学数据集。自 2005 年以来,Galaxy 项目培育了一个专注于实现可访问、可重复和协作研究的全球社区。该社区共同开发 Galaxy 软件框架,将分析工具和可视化集成到框架中,运行公共服务器,使 Galaxy 通过网络浏览器可用,使用 Galaxy 执行和发布分析,领导介绍和使用 Galaxy 的生物信息学研讨会,并开发交互式Galaxy 培训材料。在过去的两年里,Galaxy 项目的各个方面都得到了发展:代码贡献、工具集成、用户和培训材料。Galaxy 用户界面的主要进步包括分析大型数据集集合的增强功能以​​及用于探索性数据分析的交互式工具。Galaxy 框架的扩展包括对联合身份和访问管理的支持,以及增强将分析作业分发到远程资源的能力。新的社区资源包括欧洲和澳大利亚的大型公共服务器、越来越多的区域和本地 Galaxy 社区以及 Galaxy 培训网络的大幅增长。
更新日期:2020-06-27
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