当前位置: X-MOL 学术J. Virol. Methods › 论文详情
Our official English website, www.x-mol.net, welcomes your feedback! (Note: you will need to create a separate account there.)
Development of a rapid technique for extraction of viral DNA/RNA for whole genome sequencing directly from clinical liver tissues.
Journal of Virological Methods ( IF 2.2 ) Pub Date : 2020-06-02 , DOI: 10.1016/j.jviromet.2020.113907
Kinza Asif 1 , Denise O'Rourke 1 , Alistair R Legione 2 , Penelope A Steer-Cope 1 , Pollob Shil 1 , Marc S Marenda 1 , Amir H Noormohammadi 1
Affiliation  

Characterisation of the entire genome of Fowl aviadenoviruses (FAdV) requires isolation and propagation of the virus in chicken embryo liver or kidney cells, a process which is not only time consuming but may occasionally fail to result in viral growth. Furthermore, in a mixed infection, isolation in cell culture may result in the loss of viral strains. In this study, we optimised a FAdV DNA extraction technique directly from affected liver tissues using kaolin hydrated aluminium silicate treatment. The whole genome of FAdV was sequenced directly from extracted DNA without any targetted PCR based enrichment. The extraction method was also tested on avian liver tissues affected with the RNA virus Avian hepatitis E virus and demonstrated to yield sequencing grade RNA. Therefore, the method described here is a simple technique which is potentially useful for the extraction of sequencing grade DNA/RNA from tissues with high fat content.



中文翻译:

直接从临床肝脏组织中提取病毒DNA / RNA进行全基因组测序的快速技术的发展。

禽禽腺病毒(FAdV)整个基因组的表征需要在鸡胚肝或肾细胞中分离和传播该病毒,这一过程不仅费时,而且有时无法导致病毒生长。此外,在混合感染中,细胞培养物中的分离可能导致病毒株的损失。在这项研究中,我们使用高岭土水合硅酸铝处理直接从受影响的肝脏组织中优化了FAdV DNA提取技术。直接从提取的DNA测序FAdV的整个基因组,无需任何基于PCR的靶向富集。还对受RNA病毒禽E型肝炎病毒影响的禽肝组织测试了提取方法,并证明其可产生测序级RNA。因此,

更新日期:2020-06-02
down
wechat
bug