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Full-length transcriptome analysis of Misgurnus anguillicaudatus
Marine Genomics ( IF 1.3 ) Pub Date : 2020-05-26 , DOI: 10.1016/j.margen.2020.100785
Wei Luo 1 , Qing Wu 1 , Tianzhu Wang 1 , Zhou Xu 1 , Dongjie Wang 1 , Yan Wang 1 , Song Yang 1 , Yuejin Long 2 , Zongjun Du 1
Affiliation  

Faithful analysis of transcripts represents a critical component of the gene discovery, genomic characterization and annotation process in species without a reference genome. The present study generated 28,001 full-length transcripts of Misgurnus anguillicaudatus using the Pacific Bioscience (PacBio) single-molecule real-time (SMRT) sequencing system. A total of 77,346 consensus isoforms were identified, and 18,991 complete open reading frames (ORFs) detected. In total, 1345 lncRNAs were identified with high-confidence, with additional identification of a number of well-known transcription factors. The present study may facilitate additional exploration of the genomic signatures of M. anguillicaudatus.



中文翻译:

鳗MiMisgurnus anguillicaudatus)的全长转录组分析

对转录本的忠实分析代表了没有参考基因组的物种中基因发现,基因组表征和注释过程的关键组成部分。本研究使用太平洋生物科学(PacBio)单分子实时(SMRT)测序系统生成了28,001条鳗Mi(Misgurnus anguillicaudatus)全长转录本。总共鉴定出77,346个共有同工型,并检测到18,991个完整的开放阅读框(ORF)。总共鉴定出1345个lncRNA,并额外鉴定了许多众所周知的转录因子。本研究可能有助于进一步研究鳗螺的基因组特征。

更新日期:2020-05-26
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