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Deep learning architectures analysis for age-related macular degeneration segmentation on optical coherence tomography scans.
Computer Methods and Programs in Biomedicine ( IF 4.9 ) Pub Date : 2020-05-26 , DOI: 10.1016/j.cmpb.2020.105566
K Alsaih 1 , M Z Yusoff 1 , T B Tang 1 , I Faye 1 , F Mériaudeau 2
Affiliation  

Background and objectives: Aged people usually are more to be diagnosed with retinal diseases in developed countries. Retinal capillaries leakage into the retina swells and causes an acute vision loss, which is called age-related macular degeneration (AMD). The disease can not be adequately diagnosed solely using fundus images as depth information is not available. The variations in retina volume assist in monitoring ophthalmological abnormalities. Therefore, high-fidelity AMD segmentation in optical coherence tomography (OCT) imaging modality has raised the attention of researchers as well as those of the medical doctors. Many methods across the years encompassing machine learning approaches and convolutional neural networks (CNN) strategies have been proposed for object detection and image segmentation.

Methods: In this paper, we analyze four wide-spread deep learning models designed for the segmentation of three retinal fluids outputting dense predictions in the RETOUCH challenge data. We aim to demonstrate how a patch-based approach could push the performance for each method. Besides, we also evaluate the methods using the OPTIMA challenge dataset for generalizing network performance. The analysis is driven into two sections: the comparison between the four approaches and the significance of patching the images.

Results: The performance of networks trained on the RETOUCH dataset is higher than human performance. The analysis further generalized the performance of the best network obtained by fine-tuning it and achieved a mean Dice similarity coefficient (DSC) of 0.85. Out of the three types of fluids, intraretinal fluid (IRF) is more recognized, and the highest DSC value of 0.922 is achieved using Spectralis dataset. Additionally, the highest average DSC score is 0.84, which is achieved by PaDeeplabv3+ model using Cirrus dataset.

Conclusions: The proposed method segments the three fluids in the retina with high DSC value. Fine-tuning the networks trained on the RETOUCH dataset makes the network perform better and faster than training from scratch. Enriching the networks with inputting a variety of shapes by extracting patches helped to segment the fluids better than using a full image.



中文翻译:

深度学习架构分析,用于在光学相干断层扫描上分析与年龄相关的黄斑变性。

背景和目标:在发达国家,老年人通常被诊断出患有视网膜疾病。视网膜毛细血管渗入视网膜肿胀并引起急性视力丧失,这被称为年龄相关性黄斑变性(AMD)。由于无法获得深度信息,仅靠眼底图像不能充分诊断出该病。视网膜体积的变化有助于监测眼科异常。因此,光学相干断层扫描(OCT)成像方式中的高保真AMD分割引起了研究人员以及医生的关注。多年来,已经提出了许多方法,包括机器学习方法和卷积神经网络(CNN)策略,用于对象检测和图像分割。

方法:在本文中,我们分析了四个广泛的深度学习模型,这些模型旨在对在RETOUCH挑战数据中输出密集预测的三种视网膜液进行分割。我们旨在演示基于补丁的方法如何提高每种方法的性能。此外,我们还使用OPTIMA挑战数据集评估了这些方法以概括网络性能。分析分为两个部分:四种方法之间的比较以及修补图像的重要性。

结果:在RETOUCH数据集上训练的网络的性能高于人工性能。分析进一步概括了通过微调获得的最佳网络的性能,并获得了0.85的平均Dice相似系数(DSC)。在这三种类型的液体中,视网膜内液体(IRF)的识别度更高,使用Spectralis数据集可达到0.922的最高DSC值。此外,最高的平均DSC得分是0.84,这是通过PaDeeplabv3 +模型使用Cirrus数据集实现的。

结论:所提出的方法将视网膜中的三种液体分割成高DSC值。对RETOUCH数据集上训练的网络进行微调,使其性能比从头开始训练的网络更好,更快。通过提取补丁来输入各种形状来丰富网络,这有助于比使用完整图像更好地分割流体。

更新日期:2020-05-26
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