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Classes of tree-based networks.
Visual Computing for Industry, Biomedicine, and Art ( IF 3.2 ) Pub Date : 2020-05-15 , DOI: 10.1186/s42492-020-00043-z
Mareike Fischer 1 , Michelle Galla 1 , Lina Herbst 1 , Yangjing Long 2 , Kristina Wicke 1
Affiliation  

Recently, so-called tree-based phylogenetic networks have attracted considerable attention. These networks can be constructed from a phylogenetic tree, called the base tree, by adding additional edges. The primary aim of this study is to provide sufficient criteria for tree-basedness by reducing phylogenetic networks to related graph structures. Even though it is generally known that determining whether a network is tree-based is an NP-complete problem, one of these criteria, namely edge-basedness, can be verified in linear time. Surprisingly, the class of edge-based networks is closely related to a well-known family of graphs, namely, the class of generalized series-parallel graphs, and we explore this relationship in full detail. Additionally, we introduce further classes of tree-based networks and analyze their relationships.

中文翻译:

基于树的网络的类别。

近来,所谓的基于树的系统发育网络引起了相当大的关注。这些网络可以通过添加额外的边缘,从称为基础树的系统树中构建。这项研究的主要目的是通过将系统进化网络简化为相关的图结构,从而为基于树的行为提供足够的标准。尽管通常已知确定网络是否基于树是NP完全问题,但是可以在线性时间内验证这些标准之一,即基于边缘。出人意料的是,基于边缘的网络的类别与众所周知的图族(即广义的系列-平行图的类别)紧密相关,我们将详细探讨这种关系。此外,我们介绍了更多类的基于树的网络并分析了它们之间的关系。
更新日期:2020-05-15
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