Computer Methods and Programs in Biomedicine ( IF 4.9 ) Pub Date : 2020-05-21 , DOI: 10.1016/j.cmpb.2020.105514 Emily C Voldal 1 , Navneet R Hakhu 2 , Fan Xia 1 , Patrick J Heagerty 1 , James P Hughes 1
Background and objective
Stepped wedge trials (SWTs) are a type of cluster-randomized trial that are commonly used to evaluate health care interventions. Most SWT-related software packages have restrictive assumptions about the study design and correlation structure of the data. The objective of this paper is to present a package and corresponding web-based graphical user interface (GUI) that provide researchers with another, more flexible option for SWT design and analysis.
Methods
We developed an package swCRTdesign (‘stepped wedge Cluster Randomized Trial design’), which uses a random effects model to account for correlation in the data induced by a SWT design. Possible sources of correlation include clusters, time within clusters, and treatment within clusters.
Results
swCRTdesign allows a user to calculate power, simulate SWT data to streamline simulation studies (e.g. to estimate power), and create descriptive summaries and plots. Additionally, a GUI, developed using shiny, is available to calculate power and create power curves and design plots.
Conclusions
The swCRTdesign package accommodates a wide variety of SWT designs, and makes it easy to account for some sources of correlation which are not found in other packages. The user-friendly web-based GUI makes some swCRTdesign features accessible to researchers not familiar with . These two resources will make appropriately complex SWT calculations more accessible to scientists from a wide variety of backgrounds.
中文翻译:
swCRTdesign:用于阶梯式楔形试验设计和分析的 R 软件包。
背景和目标
阶梯楔形试验 (SWT) 是一种集群随机试验,通常用于评估医疗保健干预措施。大多数与 SWT 相关的软件包对研究设计和数据的相关结构都有限制性的假设。本文的目的是提出一个软件包和相应的基于 Web 的图形用户界面 (GUI),为研究人员提供另一种更灵活的 SWT 设计和分析选项。
方法
我们开发了一个软件包swCRTdesign(“阶梯楔形簇随机试验设计”),它使用随机效应模型来说明 SWT 设计引起的数据中的相关性。可能的相关性来源包括集群、集群内的时间和集群内的处理。
结果
swCRTdesign允许用户计算功率,模拟 SWT 数据以简化模拟研究(例如估算功率),并创建描述性摘要和绘图。此外,使用shiny开发的 GUI可用于计算功率并创建功率曲线和设计图。
结论
swCRTdesign包可容纳多种 SWT 设计,并且可以很容易地解释其他包中没有的一些相关性来源。用户友好的基于 Web 的 GUI 使不熟悉的研究人员可以访问一些swCRTdesign功能. 这两个资源将使来自不同背景的科学家更容易获得适当复杂的 SWT 计算。