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The Mnemiopsis Genome Project Portal: integrating new gene expression resources and improving data visualization.
Database: The Journal of Biological Databases and Curation ( IF 3.4 ) Pub Date : 2020-01-01 , DOI: 10.1093/database/baaa029
R Travis Moreland 1 , Anh-Dao Nguyen 1 , Joseph F Ryan 2, 3 , Andreas D Baxevanis 1
Affiliation  

Following the completion of the genome sequencing and gene prediction of Mnemiopsis leidyi, a lobate ctenophore that is native to the coastal waters of the western Atlantic Ocean, we developed and implemented the Mnemiopsis Genome Project Portal (MGP Portal), a comprehensive Web-based data portal for navigating the genome sequence and gene annotations. In the years following the first release of the MGP Portal, it has become evident that the inclusion of data from significant published studies on Mnemiopsis has been critical to its adoption as the centralized resource for this emerging model organism. With this most recent update, the Portal has significantly expanded to include in situ images, temporal developmental expression profiles and single-cell expression data. Recent enhancements also include implementations of an updated BLAST interface, new graphical visualization tools and updates to gene pages that integrate all new data types. Database URL: https://research.nhgri.nih.gov/mnemiopsis/.

中文翻译:

Mnemiopsis 基因组项目门户:整合新的基因表达资源并改进数据可视化。

在完成对原产于西大西洋沿海水域的叶状栉水母 Mnemiopsis leidyi 的基因组测序和基因预测后,我们开发并实施了 Mnemiopsis 基因组计划门户 (MGP Portal),这是一个基于 Web 的综合数据用于浏览基因组序列和基因注释的门户。在 MGP 门户首次发布后的几年里,很明显,包含来自关于 Mnemiopsis 的重要已发表研究的数据对于将其作为这种新兴模式生物的集中资源采用至关重要。通过最新的更新,门户网站已显着扩展,包括原位图像、时间发育表达谱和单细胞表达数据。最近的增强还包括更新 BLAST 接口的实现,新的图形可视化工具和对集成所有新数据类型的基因页面的更新。数据库网址:https://research.nhgri.nih.gov/mnemiopsis/。
更新日期:2020-05-09
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