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Parental somatic mosaicism for CNV deletions - A need for more sensitive and precise detection methods in clinical diagnostics settings.
Genomics ( IF 4.4 ) Pub Date : 2020-05-06 , DOI: 10.1016/j.ygeno.2020.05.003
Qian Liu 1 , Justyna A Karolak 2 , Christopher M Grochowski 1 , Theresa A Wilson 1 , Jill A Rosenfeld 3 , Carlos A Bacino 4 , Seema R Lalani 3 , Ankita Patel 3 , Amy Breman 3 , Janice L Smith 3 , Sau Wai Cheung 5 , James R Lupski 6 , Weimin Bi 3 , Pawel Stankiewicz 1
Affiliation  

To further assess the scale and level of parental somatic mosaicism, we queried the CMA database at Baylor Genetics. We selected 50 unrelated families where clinically relevant apparent de novo CNV-deletions were found in the affected probands. Parental blood samples screening using deletion junction-specific PCR revealed four parents with somatic mosaicism. Droplet digital PCR (ddPCR), qPCR, and amplicon-based next-generation sequencing (NGS) were used. Using ddPCR levels of mosaicism ranged from undetectable to 18.5%. Amplicon-based NGS and qPCR for the father with undetectable mosaicism was able to detect mosaicism at 0.39%. In one mother, ddPCR analysis revealed 15.6%, 10.6%, 8.2%, and undetectable levels of mosaicism in her blood, buccal cells, saliva, and urine samples, respectively. Our data suggest that more sensitive and precise methods, e.g. CNV junction-specific LR-PCR, ddPCR, or qPCR may allow for a more refined assessment of the potential disease recurrence risk for an identified variant.

中文翻译:

CNV 缺失的亲本体细胞嵌合 - 在临床诊断环境中需要更灵敏和更精确的检测方法。

为了进一步评估父母体细胞嵌合的规模和水平,我们查询了 Baylor Genetics 的 CMA 数据库。我们选择了 50 个不相关的家族,其中在受影响的先证者中发现了临床相关的明显新发 CNV 缺失。使用缺失连接特异性 PCR 筛选亲本血液样本显示四位亲本具有体细胞嵌合体。使用了液滴数字 PCR (ddPCR)、qPCR 和基于扩增子的下一代测序 (NGS)。使用 ddPCR 的嵌合水平范围从无法检测到 18.5%。对于无法检测到嵌合体的父亲,基于扩增子的 NGS 和 qPCR 能够检测到 0.39% 的嵌合体。在一位母亲中,ddPCR 分析显示她的血液、口腔细胞、唾液和尿液样本中分别有 15.6%、10.6%、8.2% 和无法检测到的嵌合体水平。我们的数据表明,更灵敏、更精确的方法,
更新日期:2020-05-06
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