当前位置: X-MOL 学术Mol. Plant Microbe Interact. › 论文详情
Our official English website, www.x-mol.net, welcomes your feedback! (Note: you will need to create a separate account there.)
Draft Genome Resource for Macrophomina phaseolina Associated With Charcoal Rot in Sorghum.
Molecular Plant-Microbe Interactions ( IF 3.5 ) Pub Date : 2020-03-24 , DOI: 10.1094/mpmi-12-19-0356-a
Neeraj Purushotham 1 , Ashley Jones 2 , Barsha Poudel 1 , Jamila Nasim 2 , Dante Adorada 1 , Adam Sparks 1 , Benjamin Schwessinger 2 , Niloofar Vaghefi 1
Affiliation  

Macrophomina phaseolina is a soil-borne phytopathogenic fungus that causes charcoal rot in several plant species, including sorghum. We constructed a draft genome of M. phaseolina isolate BRIP 70780a from sorghum, using long-read native DNA from MinION sequencing, which was error-corrected using short-read Illumina MiSeq reads. The draft genome, consisting of 22 contigs with an N50 of 4,257,441 bp, 99.3% complete benchmarking universal single-copy orthologs, and 14,471 genes, is a valuable resource to aid future studies in population genomics and molecular diagnostic marker development for rapid detection of the pathogen.

中文翻译:

与高粱炭腐病相关的菜青虫基因组资源草案。

菜豆(Phasephomina phaseolina)是一种土壤传播的植物致病真菌,可导致包括高粱在内的多种植物发生木炭腐烂。我们使用来自MinION测序的长读本机DNA构建了高粱分离株M. phaseolina分离物BRIP 70780a的基因组图,使用短读Illumina MiSeq读物进行了错误校正。由22个重叠群组成的N50为4,257,441 bp,99.3%的完整基准的通用单拷贝直系同源物和14,471个基因的标准基因组草案,是宝贵的资源,可为将来在人群基因组学和分子诊断标记开发中的快速研究提供帮助。病原。
更新日期:2020-03-24
down
wechat
bug