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Highly Contiguous Genome Resource of Colletotrichum fructicola Generated Using Long-Read Sequencing.
Molecular Plant-Microbe Interactions ( IF 3.2 ) Pub Date : 2020-04-29 , DOI: 10.1094/mpmi-11-19-0316-a
Xiaofei Liang 1 , Mengyu Cao 1 , Sen Li 1 , Yuanyuan Kong 1 , Jeffrey A Rollins 2 , Rong Zhang 1 , Guangyu Sun 1
Affiliation  

Colletotrichum fructicola is a plant-pathogenic fungus with a broad host range. It causes significant losses to important crops, including apple, pear, strawberry, and other Rosaceae and non-Rosaceae species. To date, two short read-based C. fructicola genomes are publicly available, but both are fragmented. In this study, we re-sequenced the genome of C. fructicola using nanopore long-read technology and refined the assembly with Hi-C map data. The resulting high-quality assembly is an important resource for further comparative and experimental studies with C. fructicola.

中文翻译:

使用长读测序产生的高果炭疽菌高度连续的基因组资源。

炭疽菌(Colletotrichum fructicola)是一种病原真菌,具有广泛的宿主范围。它给包括苹果,梨,草莓以及其他蔷薇科和非蔷薇科物种在内的重要农作物造成重大损失。迄今为止,已有两个短的基于阅读的短毛梭菌基因组可公开获得,但它们都是碎片化的。在这项研究中,我们使用纳米孔长读技术对C. fructicola的基因组进行了重新测序,并使用Hi-C map数据对装配进行了精炼。由此产生的高质量装配是进一步对果蝇进行比较和实验研究的重要资源。
更新日期:2020-04-29
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