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A Chromosome-Scale Genome Assembly Resource for Myriosclerotinia sulcatula Infecting Sedge Grass (Carex sp.).
Molecular Plant-Microbe Interactions ( IF 3.5 ) Pub Date : 2020-06-01 , DOI: 10.1094/mpmi-03-20-0060-a
Stefan Kusch 1 , Heba M M Ibrahim 1, 2 , Catherine Zanchetta 3 , Celine Lopez-Roques 3 , Cecile Donnadieu 3 , Sylvain Raffaele 1
Affiliation  

The fungus Myriosclerotinia sulcatula is a close relative of the notorious polyphagous plant pathogens Botrytis cinerea and Sclerotinia sclerotiorum but exhibits a host range restricted to plants from the Carex genus (Cyperaceae family). To date, there are no genomic resources available for fungi in the Myriosclerotinia genus. Here, we present a chromosome-scale reference genome assembly for M. sulcatula. The assembly contains 24 contigs with a total length of 43.53 Mbp, with scaffold N50 of 2,649.7 kbp and N90 of 1,133.1 kbp. BRAKER-predicted gene models were manually curated using WebApollo, resulting in 11,275 protein-coding genes that we functionally annotated. We provide a high-quality reference genome assembly and annotation for M. sulcatula as a resource for studying evolution and pathogenicity in fungi from the Sclerotiniaceae family.

中文翻译:

豆科Myersclerotinia sulcatula感染莎草(Carex sp。)的染色体规模基因组装配资源。

真菌Myriosclerotinia sulcatula是臭名昭著的多食性植物病原体灰葡萄孢菌和菌核盘菌的近亲,但其宿主范围仅限于Carex属(莎草科)的植物。迄今为止,Myriosclerotinia属中没有可用于真菌的基因组资源。在这里,我们介绍了M. sulcatula的染色体规模参考基因组。该组件包含24个重叠群,总长度为43.53 Mbp,支架N50为2,649.7 kbp,N90为1,133.1 kbp。BRAKER预测的基因模型是使用WebApollo手动管理的,产生了11275个蛋白质编码的基因,我们在功能上进行了注释。我们提供了高品质的参考基因组组装和注释,用于研究苏丹乳杆菌,作为研究菌核科的真菌进化和致病性的资源。
更新日期:2020-04-20
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