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Whole genome sequence of Diaporthe capsici, a new pathogen of walnut blight.
Genomics ( IF 3.4 ) Pub Date : 2020-05-03 , DOI: 10.1016/j.ygeno.2020.04.018
Xinmei Fang 1 , Kai Qin 1 , Shujiang Li 1 , Shan Han 1 , Tianhui Zhu 1 , Xinmei Fang 1 , Kai Qin 1
Affiliation  

Many fungi in the Diaporthe genus across the world are pathogenic. Diaporthe capsici. is a pathogenic fungus that can infect peppers and walnuts, causing their death. The aim of this study was to develop a genomic resource to provide substantial data and a theoretical basis for research on molecular pathogenesis, transcriptome, proteome, and metabonome of D. capsici. The whole genome of D. capsici was sequenced using the PacBio RSII sequencing platform, and functional annotation was performed using different public databases. The genome was found to be 57.56 Mb in size, with an N50 contig size of 5,171,887 bp, and encodes 14,425 putative genes. This is the first genome-scale assembly and annotation for D. capsici, which is the eighth species in Diaporthe to be sequenced.

中文翻译:

核桃疫病新病原体辣椒红豆全基因组序列。

世界各地的 Diaporthe 属中的许多真菌都是致病的。辣椒。是一种病原真菌,可以感染辣椒和核桃,导致它们死亡。本研究的目的是开发基因组资源,为辣椒的分子发病机制、转录组、蛋白质组和代谢组的研究提供大量数据和理论基础。使用PacBio RSII测序平台对辣椒全基因组进行测序,并使用不同的公共数据库进行功能注释。发现基因组大小为 57.56 Mb,N50 contig 大小为 5,171,887 bp,编码 14,425 个推定基因。这是 D. capsici 的第一个基因组规模组装和注释,D. capsici 是 Diaporthe 中第 8 个被测序的物种。
更新日期:2020-05-03
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