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Biochemical characterization of d-aspartate oxidase from Caenorhabditis elegans: its potential use in the determination of free d-glutamate in biological samples.
Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics ( IF 2.5 ) Pub Date : 2020-05-03 , DOI: 10.1016/j.bbapap.2020.140442
Masumi Katane 1 , Hisashi Kuwabara 1 , Kazuki Nakayama 1 , Yasuaki Saitoh 1 , Tetsuya Miyamoto 1 , Masae Sekine 1 , Hiroshi Homma 1
Affiliation  

d-Aspartate oxidase (DDO) is a flavin adenine dinucleotide (FAD)-containing flavoprotein that stereospecifically acts on acidic d-amino acids (i.e., free d-aspartate and d-glutamate). Mammalian DDO, which exhibits higher activity toward d-aspartate than d-glutamate, is presumed to regulate levels of d-aspartate in the body and is not thought to degrade d-glutamate in vivo. By contrast, three DDO isoforms are present in the nematode Caenorhabditis elegans, DDO-1, DDO-2, and DDO-3, all of which exhibit substantial activity toward d-glutamate as well as d-aspartate. In this study, we optimized the Escherichia coli culture conditions for production of recombinant C. elegans DDO-1, purified the protein, and showed that it is a flavoprotein with a noncovalently but tightly attached FAD. Furthermore, C. elegans DDO-1, but not mammalian (rat) DDO, efficiently and selectively degraded d-glutamate in addition to d-aspartate, even in the presence of various other amino acids. Thus, C. elegans DDO-1 might be a useful tool for determining these acidic d-amino acids in biological samples.

中文翻译:

秀丽隐杆线虫的d-天冬氨酸氧化酶的生化特性:其在测定生物样品中游离d-谷氨酸中的潜在用途。

d-天冬氨酸氧化酶(DDO)是一种含有黄素腺嘌呤二核苷酸(FAD)的黄素蛋白,其立体定向作用于酸性d-氨基酸(即游离的d-天冬氨酸和d-谷氨酸)。哺乳动物DDO对d-天冬氨酸的活性高于d-谷氨酸,据推测可调节体内d-天冬氨酸的水平,并且不认为其会在体内降解d-谷氨酸。相比之下,线虫秀丽隐杆线虫中存在三种DDO同工型,即DDO-1,DDO-2和DDO-3,它们均对d-谷氨酸和d-天冬氨酸具有实质性活性。在这项研究中,我们优化了大肠杆菌的培养条件,以生产重组秀丽隐杆线虫DDO-1,纯化了该蛋白质,并表明它是一种具有非共价但紧密连接的FAD的黄素蛋白。此外,秀丽隐杆线虫DDO-1,但不是哺乳动物(大鼠)DDO,即使存在多种其他氨基酸,除d-天门冬氨酸外,还可以有效和选择性地降解d-谷氨酸。因此,秀丽隐杆线虫DDO-1可能是确定生物样品中这些酸性d-氨基酸的有用工具。
更新日期:2020-05-03
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